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Ppfia4 Gene Detail
Summary
  • Symbol
    Ppfia4
  • Name
    protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
  • Synonyms
    1110008G13Rik, Gm3812, Liprin-alpha4, Liprin-alpha4a, Liprin-alpha4b, LOC100042382
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915757
    NCBI Gene: 68507
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:134224521-134260666 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 58.18 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1019 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915757
 protein coding gene Chr1:134224521-134272493 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016503
 protein coding gene Chr1:137944846-138001099 (-)
A/J MGP_AJ_G0016486
 protein coding gene Chr1:132759578-132807756 (-)
AKR/J MGP_AKRJ_G0016451
 protein coding gene Chr1:136718722-136768561 (-)
BALB/cJ MGP_BALBcJ_G0016446
 protein coding gene Chr1:133095594-133142949 (-)
C3H/HeJ MGP_C3HHeJ_G0016272
 protein coding gene Chr1:136819518-136871186 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016907
 protein coding gene Chr1:142976988-143034150 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014618
 protein coding gene Chr1:125901560-125938241 (-)
CAST/EiJ MGP_CASTEiJ_G0015852
 protein coding gene Chr1:135867286-135919977 (-)
CBA/J MGP_CBAJ_G0016245
 protein coding gene Chr1:147934963-147985305 (-)
DBA/2J MGP_DBA2J_G0016351
 protein coding gene Chr1:131770971-131819322 (-)
FVB/NJ MGP_FVBNJ_G0016350
 protein coding gene Chr1:130397602-130436539 (-)
LP/J MGP_LPJ_G0016422
 protein coding gene Chr1:139225352-139278107 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016375
 protein coding gene Chr1:153629679-153680475 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016943
 protein coding gene Chr1:136448735-136485807 (-)
PWK/PhJ MGP_PWKPhJ_G0015638
 protein coding gene Chr1:130788805-130839497 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015425
 protein coding gene Chr1:135416279-135465480 (-)
WSB/EiJ MGP_WSBEiJ_G0015915
 protein coding gene Chr1:136481412-136520106 (-)



Homology
more
  • Human Ortholog
    PPFIA4, PTPRF interacting protein alpha 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PPFIA4, PTPRF interacting protein alpha 4
  • Links
    NCBI Gene ID: 8497
    neXtProt AC: NX_O75335
    UniProt: O75335

  • Chr Location
    1q32.1; chr1:203026491-203078740 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    891
  • Tissues
    63
  • cDNA Data
    44
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026458 Ensembl Gene Model | MGI Sequence Detail 36146 C57BL/6J ±  kb
    transcript ENSMUST00000168515 Ensembl | MGI Sequence Detail 6067 Not Applicable  
    polypeptide ENSMUSP00000128314 Ensembl | MGI Sequence Detail 1187 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 51
      cDNA 46
      Primer pair 5

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2138244, MGI:2138361, MGI:2138702, MGI:3823247
    References
    more
    • Summaries
      All 46
      Developmental Gene Expression 5
      Gene Ontology 6
      Phenotypes 12
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:358058 Emperador-Melero J, et al., Distinct active zone protein machineries mediate Ca(2+) channel clustering and vesicle priming at hippocampal synapses. Nat Neurosci. 2024 Sep;27(9):1680-1694
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory