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Zcchc9 Gene Detail
Summary
  • Symbol
    Zcchc9
  • Name
    zinc finger, CCHC domain containing 9
  • Synonyms
    1810019C21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916335
    NCBI Gene: 69085
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:91944652-91955824 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 47.43 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    377 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916335
 protein coding gene Chr13:91944652-91955824 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020809
 protein coding gene Chr13:93095936-93106047 (-)
A/J MGP_AJ_G0020763
 protein coding gene Chr13:89647890-89659433 (-)
AKR/J MGP_AKRJ_G0020736
 protein coding gene Chr13:92367667-92376851 (-)
BALB/cJ MGP_BALBcJ_G0020759
 protein coding gene Chr13:90290718-90299969 (-)
C3H/HeJ MGP_C3HHeJ_G0020553
 protein coding gene Chr13:92068460-92078224 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021196
 protein coding gene Chr13:95950380-95959633 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018764
 protein coding gene Chr13:85600631-85609656 (-)
CAST/EiJ MGP_CASTEiJ_G0020072
 protein coding gene Chr13:91332959-91342036 (-)
CBA/J MGP_CBAJ_G0020512
 protein coding gene Chr13:99744495-99755386 (-)
DBA/2J MGP_DBA2J_G0020637
 protein coding gene Chr13:89406709-89417650 (-)
FVB/NJ MGP_FVBNJ_G0020617
 protein coding gene Chr13:88224450-88233942 (-)
LP/J MGP_LPJ_G0020710
 protein coding gene Chr13:93210874-93222240 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020646
 protein coding gene Chr13:100256357-100267839 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021236
 protein coding gene Chr13:91772520-91781841 (-)
PWK/PhJ MGP_PWKPhJ_G0019824
 protein coding gene Chr13:88159679-88168848 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019648
 protein coding gene Chr13:88039089-88053071 (-)
WSB/EiJ MGP_WSBEiJ_G0020129
 protein coding gene Chr13:92254167-92265074 (-)



Homology
more
  • Human Ortholog
    ZCCHC9, zinc finger CCHC-type containing 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZCCHC9, zinc finger CCHC-type containing 9
  • Synonyms
    PPP1R41
  • Links
    NCBI Gene ID: 84240
    neXtProt AC: NX_Q8N567
    UniProt: Q8N567

  • Chr Location
    5q14.1; chr5:81301587-81313297 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69085 NCBI Gene Model | MGI Sequence Detail 11173 C57BL/6J ±  kb
transcript NM_145453 RefSeq | MGI Sequence Detail 1544 FVB/N  
polypeptide Q8R1J3 UniProt | EBI | MGI Sequence Detail 271 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
References
more
  • Summaries
    All 31
    Gene Ontology 5
    Phenotypes 10
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory