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Cnppd1 Gene Detail
Summary
  • Symbol
    Cnppd1
  • Name
    cyclin Pas1/PHO80 domain containing 1
  • Synonyms
    1810031K17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916421
    NCBI Gene: 69171
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:75112406-75119374 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 38.60 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    205 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916421
 protein coding gene Chr1:75111198-75119374 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016171
 protein coding gene Chr1:75693138-75703623 (-)
A/J MGP_AJ_G0016154
 protein coding gene Chr1:73055360-73063497 (-)
AKR/J MGP_AKRJ_G0016111
 protein coding gene Chr1:75083836-75091985 (-)
BALB/cJ MGP_BALBcJ_G0016109
 protein coding gene Chr1:73118572-73126731 (-)
C3H/HeJ MGP_C3HHeJ_G0015940
 protein coding gene Chr1:75415159-75423313 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016562
 protein coding gene Chr1:78647345-78655504 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014283
 protein coding gene Chr1:68618188-68626467 (-)
CAST/EiJ MGP_CASTEiJ_G0015524
 protein coding gene Chr1:74751807-74760113 (-)
CBA/J MGP_CBAJ_G0015913
 protein coding gene Chr1:81200889-81209042 (-)
DBA/2J MGP_DBA2J_G0016014
 protein coding gene Chr1:72375225-72383384 (-)
FVB/NJ MGP_FVBNJ_G0016017
 protein coding gene Chr1:71571654-71579815 (-)
LP/J MGP_LPJ_G0016086
 protein coding gene Chr1:76819302-76827457 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016037
 protein coding gene Chr1:84562015-84570161 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016609
 protein coding gene Chr1:75152222-75160381 (-)
PWK/PhJ MGP_PWKPhJ_G0015311
 protein coding gene Chr1:71843214-71851632 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015089
 protein coding gene Chr1:74514826-74522647 (-)
WSB/EiJ MGP_WSBEiJ_G0015586
 protein coding gene Chr1:74965646-74973787 (-)



Homology
more
  • Human Ortholog
    CNPPD1, cyclin Pas1/PHO80 domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CNPPD1, cyclin Pas1/PHO80 domain containing 1
  • Synonyms
    C2orf24, CGI-57
  • Links
    NCBI Gene ID: 27013
    neXtProt AC: NX_Q9BV87
    UniProt: Q9BV87

  • Chr Location
    2q35; chr2:219171897-219178156 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    24 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Spontaneous
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Cnppd1
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    11 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    782
  • Tissues
    45
  • cDNA Data
    102
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69171 NCBI Gene Model | MGI Sequence Detail 6969 C57BL/6J ±  kb
transcript NM_026977 RefSeq | MGI Sequence Detail 2469 C57BL/6  
polypeptide Q8K158 UniProt | EBI | MGI Sequence Detail 407 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 102
    cDNA 102

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138501
References
more
  • Summaries
    All 51
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 3
    Phenotypes 24
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory