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Cdhr4 Gene Detail
Summary
  • Symbol
    Cdhr4
  • Name
    cadherin-related family member 4
  • Synonyms
    1700021K14Rik, Cdh29, D330022A01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916648
    NCBI Gene: 69398
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:107869696-107876883 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.07 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    203 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916648
 protein coding gene Chr9:107869656-107876883 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035279
 protein coding gene Chr9:109908785-109915972 (+)
A/J MGP_AJ_G0035258
 protein coding gene Chr9:105896559-105903746 (+)
AKR/J MGP_AKRJ_G0035190
 protein coding gene Chr9:108537479-108544665 (+)
BALB/cJ MGP_BALBcJ_G0035252
 protein coding gene Chr9:105568478-105575665 (+)
C3H/HeJ MGP_C3HHeJ_G0034962
 protein coding gene Chr9:108934690-108941877 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035772
 protein coding gene Chr9:112882646-112889833 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032670
 protein coding gene Chr9:103329460-103336816 (+)
CAST/EiJ MGP_CASTEiJ_G0034273
 protein coding gene Chr9:108892304-108899482 (+)
CBA/J MGP_CBAJ_G0034930
 protein coding gene Chr9:116879119-116886318 (+)
DBA/2J MGP_DBA2J_G0035091
 protein coding gene Chr9:105353158-105360345 (+)
FVB/NJ MGP_FVBNJ_G0035039
 protein coding gene Chr9:104116891-104124078 (+)
LP/J MGP_LPJ_G0035167
 protein coding gene Chr9:110103243-110110414 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035078
 protein coding gene Chr9:118472716-118479903 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035793
 protein coding gene Chr9:108815872-108823059 (+)
PWK/PhJ MGP_PWKPhJ_G0033980
 protein coding gene Chr9:105673474-105680656 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033815
 protein coding gene Chr9:108880345-108887553 (+)
WSB/EiJ MGP_WSBEiJ_G0034394
 protein coding gene Chr9:108695153-108702340 (+)



Homology
more
  • Human Ortholog
    CDHR4, cadherin related family member 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDHR4, cadherin related family member 4
  • Synonyms
    CDH29, PRO34300
  • Links
    NCBI Gene ID: 389118
    neXtProt AC: NX_A6H8M9
    UniProt: A6H8M9

  • Chr Location
    3p21.31; chr3:49790732-49802914 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032595 Ensembl Gene Model | MGI Sequence Detail 7188 C57BL/6J ±  kb
transcript ENSMUST00000177173 Ensembl | MGI Sequence Detail 2480 Not Applicable  
polypeptide ENSMUSP00000135184 Ensembl | MGI Sequence Detail 783 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143196, MGI:2443519
References
more
  • Summaries
    All 24
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory