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Ccdc89 Gene Detail
Summary
  • Symbol
    Ccdc89
  • Name
    coiled-coil domain containing 89
  • Synonyms
    1700019B01Rik, BOIP
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917304
    NCBI Gene: 70054
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:90075785-90077877 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 50.58 cM, cytoband E1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    170 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917304
 protein coding gene Chr7:90075520-90077877 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032506
 protein coding gene Chr7:92850578-92852926 (+)
A/J MGP_AJ_G0032480
 protein coding gene Chr7:90612076-90614424 (+)
AKR/J MGP_AKRJ_G0032416
 protein coding gene Chr7:92729504-92731852 (+)
BALB/cJ MGP_BALBcJ_G0032491
 protein coding gene Chr7:90256913-90259261 (+)
C3H/HeJ MGP_C3HHeJ_G0032206
 protein coding gene Chr7:93118354-93120702 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032989
 protein coding gene Chr7:96475622-96477970 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029984
 protein coding gene Chr7:93495813-93498155 (+)
CAST/EiJ MGP_CASTEiJ_G0031533
 protein coding gene Chr7:84557990-84560335 (+)
CBA/J MGP_CBAJ_G0032173
 protein coding gene Chr7:99685830-99688178 (+)
DBA/2J MGP_DBA2J_G0032325
 protein coding gene Chr7:89046887-89049235 (+)
FVB/NJ MGP_FVBNJ_G0032281
 protein coding gene Chr7:88913906-88916254 (+)
LP/J MGP_LPJ_G0032414
 protein coding gene Chr7:94123910-94126258 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032315
 protein coding gene Chr7:100694441-100696789 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033011
 protein coding gene Chr7:92013641-92015989 (+)
PWK/PhJ MGP_PWKPhJ_G0031251
 protein coding gene Chr7:82087093-82089434 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031094
 protein coding gene Chr7:79335175-79337522 (+)
WSB/EiJ MGP_WSBEiJ_G0031650
 protein coding gene Chr7:92686997-92689345 (+)



Homology
more
  • Human Ortholog
    CCDC89, coiled-coil domain containing 89
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC89, coiled-coil domain containing 89
  • Links
    NCBI Gene ID: 220388
    neXtProt AC: NX_Q8N998
    UniProt: Q8N998

  • Chr Location
    11q14.1; chr11:85683848-85686195 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    29 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    721
  • Tissues
    14
  • cDNA Data
    11
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000044362 Ensembl Gene Model | MGI Sequence Detail 2093 C57BL/6J ±  kb
transcript ENSMUST00000061391 Ensembl | MGI Sequence Detail 2093 Not Applicable  
polypeptide ENSMUSP00000060309 Ensembl | MGI Sequence Detail 370 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 11
    Other 2

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142140
References
more
  • Summaries
    All 53
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 29
  • Earliest
    J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory