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Rpf1 Gene Detail
Summary
  • Symbol
    Rpf1
  • Name
    ribosome production factor 1 homolog
  • Synonyms
    2210420E24Rik, 2310066N05Rik, Bxdc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917535
    NCBI Gene: 70285
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:146212099-146227184 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 71.57 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    552 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917535
 protein coding gene Chr3:146211711-146227184 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027974
 protein coding gene Chr3:150027950-150043390 (-)
A/J MGP_AJ_G0027933
 protein coding gene Chr3:144634290-144649727 (-)
AKR/J MGP_AKRJ_G0027899
 protein coding gene Chr3:148498875-148514316 (-)
BALB/cJ MGP_BALBcJ_G0027945
 protein coding gene Chr3:144459957-144475394 (-)
C3H/HeJ MGP_C3HHeJ_G0027675
 protein coding gene Chr3:148864149-148879586 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028388
 protein coding gene Chr3:155050726-155066446 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025726
 protein coding gene Chr3:139695858-139711709 (-)
CAST/EiJ MGP_CASTEiJ_G0027128
 protein coding gene Chr3:148848636-148864008 (-)
CBA/J MGP_CBAJ_G0027650
 protein coding gene Chr3:160559640-160575079 (-)
DBA/2J MGP_DBA2J_G0027790
 protein coding gene Chr3:143788310-143803914 (-)
FVB/NJ MGP_FVBNJ_G0027757
 protein coding gene Chr3:141204137-141219458 (-)
LP/J MGP_LPJ_G0027901
 protein coding gene Chr3:151411379-151426841 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027790
 protein coding gene Chr3:168840002-168856495 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028447
 protein coding gene Chr3:148084739-148100413 (-)
PWK/PhJ MGP_PWKPhJ_G0026851
 protein coding gene Chr3:143644335-143659809 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026679
 protein coding gene Chr3:146250301-146265101 (-)
WSB/EiJ MGP_WSBEiJ_G0027208
 protein coding gene Chr3:149060861-149076315 (-)



Homology
more
  • Human Ortholog
    RPF1, ribosome production factor 1 homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPF1, ribosome production factor 1 homolog
  • Synonyms
    BXDC5
  • Links
    NCBI Gene ID: 80135
    neXtProt AC: NX_Q9H9Y2
    UniProt: Q9H9Y2

  • Chr Location
    1p22.3; chr1:84479259-84498352 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    10
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70285 NCBI Gene Model | MGI Sequence Detail 15086 C57BL/6J ±  kb
transcript NM_027332 RefSeq | MGI Sequence Detail 1990 C57BL/6  
polypeptide Q7TND5 UniProt | EBI | MGI Sequence Detail 349 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
Other
Accession IDs
less
MGI:1917396
References
more
  • Summaries
    All 30
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory