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Nipal1 Gene Detail
Summary
  • Symbol
    Nipal1
  • Name
    NIPA-like domain containing 1
  • Synonyms
    3830408G10Rik, Npal1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917951
    NCBI Gene: 70701
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:72805139-72828421 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 38.44 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    866 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917951
 protein coding gene Chr5:72805138-72828421 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029615
 protein coding gene Chr5:72586635-72609917 (+)
A/J MGP_AJ_G0029583
 protein coding gene Chr5:69881152-69904433 (+)
AKR/J MGP_AKRJ_G0029531
 protein coding gene Chr5:72119116-72142386 (+)
BALB/cJ MGP_BALBcJ_G0029591
 protein coding gene Chr5:70577741-70601025 (+)
C3H/HeJ MGP_C3HHeJ_G0029316
 protein coding gene Chr5:72480937-72507855 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030046
 protein coding gene Chr5:75579197-75602690 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027288
 protein coding gene Chr5:65588311-65613418 (+)
CAST/EiJ MGP_CASTEiJ_G0028725
 protein coding gene Chr5:71592580-71616480 (+)
CBA/J MGP_CBAJ_G0029284
 protein coding gene Chr5:78001066-78024329 (+)
DBA/2J MGP_DBA2J_G0029431
 protein coding gene Chr5:69922394-69945613 (+)
FVB/NJ MGP_FVBNJ_G0029391
 protein coding gene Chr5:69100515-69123787 (+)
LP/J MGP_LPJ_G0029515
 protein coding gene Chr5:73044151-73067438 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029417
 protein coding gene Chr5:81373957-81397189 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030080
 protein coding gene Chr5:71695604-71718886 (+)
PWK/PhJ MGP_PWKPhJ_G0028447
 protein coding gene Chr5:68904517-68927791 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028280
 protein coding gene Chr5:71030152-71053750 (+)
WSB/EiJ MGP_WSBEiJ_G0028805
 protein coding gene Chr5:71973843-71997086 (+)



Homology
more
  • Human Ortholog
    NIPAL1, NIPA like domain containing 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NIPAL1, NIPA like domain containing 1
  • Synonyms
    NIPA3, NPAL1, SLC57A3
  • Links
    NCBI Gene ID: 152519
    neXtProt AC: NX_Q6NVV3
    UniProt: Q6NVV3

  • Chr Location
    4p12; chr4:47914142-48040173 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    19 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    14
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70701 NCBI Gene Model | MGI Sequence Detail 23283 C57BL/6J ±  kb
transcript NM_001081205 RefSeq | MGI Sequence Detail 4205 Not Specified  
polypeptide Q8BMW7 UniProt | EBI | MGI Sequence Detail 416 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 6
References
more
  • Summaries
    All 46
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 19
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory