About   Help   FAQ
Slco6d1 Gene Detail
Summary
  • Symbol
    Slco6d1
  • Name
    solute carrier organic anion transporter family, member 6d1
  • Synonyms
    4921511I05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918116
    NCBI Gene: 70866
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:98348849-98444716 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 47.76 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3014 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918116
 protein coding gene Chr1:98348812-98444716 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016362
 protein coding gene Chr1:100191235-100299623 (+)
A/J MGP_AJ_G0016346
 protein coding gene Chr1:96676161-96776735 (+)
AKR/J MGP_AKRJ_G0016306
 protein coding gene Chr1:99495563-99593615 (+)
BALB/cJ MGP_BALBcJ_G0016302
 protein coding gene Chr1:96834827-96947265 (+)
C3H/HeJ MGP_C3HHeJ_G0016129
 protein coding gene Chr1:99775204-99880179 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016761
 protein coding gene Chr1:104169031-104269069 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014479
 protein coding gene Chr1:90918670-91096852 (+)
CAST/EiJ MGP_CASTEiJ_G0015711
 protein coding gene Chr1:98882611-98974873 (+)
CBA/J MGP_CBAJ_G0016102
 protein coding gene Chr1:107575888-107689312 (+)
DBA/2J MGP_DBA2J_G0016207
 protein coding gene Chr1:95896758-96009313 (+)
FVB/NJ MGP_FVBNJ_G0016208
 protein coding gene Chr1:94887151-94989749 (+)
LP/J MGP_LPJ_G0016281
 protein coding gene Chr1:101484410-101586191 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016234
 protein coding gene Chr1:111282575-111401180 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016800
 protein coding gene Chr1:99531373-99626520 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0015283
 protein coding gene Chr1:98353080-98456220 (+)
WSB/EiJ MGP_WSBEiJ_G0015774
 protein coding gene Chr1:99332638-99453744 (+)



Homology
more
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
  • Synonyms
    CT48, GST, OATP6A1, OATP-I, OATPY
  • Links
    NCBI Gene ID: 133482
    neXtProt AC: NX_Q86UG4
    UniProt: Q86UG4

  • Chr Location
    5q21.1; chr5:102371774-102499016 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026336 Ensembl Gene Model | MGI Sequence Detail 95868 C57BL/6J ±  kb
    transcript ENSMUST00000027575 Ensembl | MGI Sequence Detail 2328 Not Applicable  
    polypeptide ENSMUSP00000027575 Ensembl | MGI Sequence Detail 683 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 5
      cDNA 5

      Microarray probesets 2
    References
    more
    • Summaries
      All 27
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory