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Alyreffm1 Gene Detail
Summary
  • Symbol
    Alyreffm1
  • Name
    Aly/REF export factor family member 1
  • Synonyms
    4930563O14Rik, 4931428L18Rik
Location &
Maps
more
  • Sequence Map
    Chr1:31180159-31261737 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 11.52 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2474 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918238
 protein coding gene Chr1:31036933-31261765 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015897
 protein coding gene Chr1:29362181-29464290 (-)
A/J MGP_AJ_G0015880
 protein coding gene Chr1:28658629-28748393 (-)
AKR/J MGP_AKRJ_G0015835
 protein coding gene Chr1:28996608-29085050 (-)
BALB/cJ MGP_BALBcJ_G0015834
 protein coding gene Chr1:28386208-28479135 (-)
C3H/HeJ MGP_C3HHeJ_G0015668
 protein coding gene Chr1:29160078-29259444 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016288
 protein coding gene Chr1:30700155-30801977 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014007
 protein coding gene Chr1:26166431-26250807 (-)
CAST/EiJ MGP_CASTEiJ_G0015247
 protein coding gene Chr1:29058022-29154101 (-)
CBA/J MGP_CBAJ_G0015640
 protein coding gene Chr1:31540447-31648988 (-)
DBA/2J MGP_DBA2J_G0015740
 protein coding gene Chr1:28099784-28192897 (-)
FVB/NJ MGP_FVBNJ_G0015743
 protein coding gene Chr1:27662635-27755650 (-)
LP/J MGP_LPJ_G0015811
 protein coding gene Chr1:29644972-29733459 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015763
 protein coding gene Chr1:33624017-33714518 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016335
 protein coding gene Chr1:28956159-29045179 (-)
PWK/PhJ MGP_PWKPhJ_G0015032
 protein coding gene Chr1:27784082-27873728 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014811
 protein coding gene Chr1:29007813-29103728 (-)
WSB/EiJ MGP_WSBEiJ_G0015311
 protein coding gene Chr1:28915559-29015430 (-)



Homology
more
  • Human Ortholog
    ALYREF, Aly/REF export factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ALYREF, Aly/REF export factor
  • Synonyms
    ALY, ALY/REF, BEF, REF, THOC4
  • Links
    NCBI Gene ID: 10189
    neXtProt AC: NX_Q86V81
    UniProt: Q86V81

  • Chr Location
    17q25.3; chr17:81887835-81891587 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    12
Sequences &
Gene Models
less
  • All Sequences
    44
  • RefSeq
    1
  • UniProt
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic 70988 NCBI Gene Model | MGI Sequence Detail 81579 C57BL/6J ±  kb
transcript NR_033445 RefSeq | MGI Sequence Detail 1094 C57BL/6  
polypeptide A0A087WNP0 UniProt | EBI | MGI Sequence Detail 241 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR051229 ALYREF mRNA export adapter
    IPR025715 Chromatin target of PRMT1 protein, C-terminal
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 2
Other
Accession IDs
less
MGI:1922507, MGI:7595543
References
more
  • Summaries
    All 20
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory