Mfap3l MGI Mouse Gene Detail - MGI:1918556 - microfibrillar-associated protein 3-like

Symbol

Mfap3l
Name

microfibrillar-associated protein 3-like
Synonyms

4933428A15Rik, 5430405D20Rik, mKIAA0626, NYD-sp9

Feature Type

protein coding gene
IDs

MGI:1918556
NCBI Gene: 71306
Alliance

gene page
Transcription Start Sites

13 TSS

Sequence Map

Chr8:61085861-61129763 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 8, 30.86 cM, cytoband B3.2
Mapping Data

3 experiments

SNPs within 2kb

1256 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918556	protein coding gene	Chr8:61085859-61129765 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033630	protein coding gene	Chr8:60517086-60561583 (+)
A/J	MGP_AJ_G0033612	protein coding gene	Chr8:57940755-57984555 (+)
AKR/J	MGP_AKRJ_G0033537	protein coding gene	Chr8:59602428-59647317 (+)
BALB/cJ	MGP_BALBcJ_G0033608	protein coding gene	Chr8:58205497-58250949 (+)
C3H/HeJ	MGP_C3HHeJ_G0033318	protein coding gene	Chr8:60274760-60320019 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034125	protein coding gene	Chr8:62835311-62880437 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031073	protein coding gene	Chr8:53215533-53259088 (+)
CAST/EiJ	MGP_CASTEiJ_G0032643	protein coding gene	Chr8:59684502-59727496 (+)
CBA/J	MGP_CBAJ_G0033296	protein coding gene	Chr8:65109632-65155810 (+)
DBA/2J	MGP_DBA2J_G0033450	protein coding gene	Chr8:57697536-57741073 (+)
FVB/NJ	MGP_FVBNJ_G0033391	protein coding gene	Chr8:57017340-57061107 (+)
LP/J	MGP_LPJ_G0033538	protein coding gene	Chr8:60481346-60524878 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033435	protein coding gene	Chr8:67231110-67280540 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034143	protein coding gene	Chr8:59862890-59908481 (+)
PWK/PhJ	MGP_PWKPhJ_G0032352	protein coding gene	Chr8:57011909-57055794 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0032188	protein coding gene	Chr8:58840578-58885457 (+)
WSB/EiJ	MGP_WSBEiJ_G0032760	protein coding gene	Chr8:60180121-60228929 (+)

Human Ortholog

MFAP3L, microfibril associated protein 3 like

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MFAP3L, microfibril associated protein 3 like
Synonyms

NYD-sp9
Links

HGNC:29083

NCBI Gene ID: 9848

neXtProt AC: NX_O75121

UniProt: O75121
Chr Location

4q33; chr4:169986597-170033031 (-) GRCh38

MGI Vertebrate Homology

Mfap3l stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: MFAP3L
Gene Tree

Mfap3l

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

3
Chemically induced (other)

1
Targeted

2
Genomic Mutations

1 involving Mfap3l
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

15 strains or lines available

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All GO Annotations

10
GO References

3

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

733
Tissues

7
cDNA Data

30
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase mfap3l

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All Sequences

48
RefSeq

8
UniProt

1
CCDS

CCDS22321.1, CCDS80877.1

Ensembl

ENSMUSG00000031647 (Evidence)
NCBI Gene

71306

			Length	Strain/Species	Flank
genomic	ENSMUSG00000031647	Ensembl Gene Model \| MGI Sequence Detail	43903	C57BL/6J	± kb
transcript	ENSMUST00000160719	Ensembl \| MGI Sequence Detail	6335	Not Applicable
polypeptide	ENSMUSP00000125139	Ensembl \| MGI Sequence Detail	409	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000010363 microfibrillar-associated protein 3-like

(term hierarchy)
InterPro Domains

IPR013098 Immunoglobulin I-set

IPR007110 Immunoglobulin-like domain

IPR036179 Immunoglobulin-like domain superfamily

IPR013783 Immunoglobulin-like fold

IPR003599 Immunoglobulin subtype

IPR003598 Immunoglobulin subtype 2
GlyGen

Q9D3X9 5 sites, 4 N-linked glycans (5 sites)

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All nucleic 31

cDNA 31

Microarray probesets 6

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MGI:1918658, MGI:2142558, MGI:2142769

Summaries

All 30

Developmental Gene Expression 1

Gene Ontology 3

Phenotypes 4
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Mfap3l:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77454	Chr8:61085840-61085849 (+)	-16 bp
Tssr77455	Chr8:61085852-61085870 (+)	0 bp
Tssr77456	Chr8:61085890-61085939 (+)	54 bp
Tssr77457	Chr8:61093413-61093423 (+)	7,557 bp
Tssr77458	Chr8:61093887-61093907 (+)	8,036 bp
Tssr77459	Chr8:61108534-61108556 (+)	22,684 bp
Tssr77460	Chr8:61108579-61108596 (+)	22,727 bp
Tssr77461	Chr8:61124607-61124619 (+)	38,752 bp
Tssr77462	Chr8:61126394-61126400 (+)	40,536 bp
Tssr77463	Chr8:61127388-61127410 (+)	41,538 bp
Tssr77464	Chr8:61127534-61127547 (+)	41,680 bp
Tssr77465	Chr8:61127580-61127591 (+)	41,725 bp
Tssr77466	Chr8:61127605-61127617 (+)	41,750 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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