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Chst13 Gene Detail
Summary
  • Symbol
    Chst13
  • Name
    carbohydrate sulfotransferase 13
  • Synonyms
    1110067M19Rik, C4ST-3, Chst13
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919047
    NCBI Gene: 71797
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:90285333-90302167 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 40.13 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    462 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919047
 protein coding gene Chr6:90285331-90302167 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031034
 protein coding gene Chr6:91838400-91852638 (-)
A/J MGP_AJ_G0031002
 protein coding gene Chr6:88349051-88363056 (-)
AKR/J MGP_AKRJ_G0030934
 protein coding gene Chr6:90814817-90830808 (-)
BALB/cJ MGP_BALBcJ_G0031014
 protein coding gene Chr6:88293515-88307606 (-)
C3H/HeJ MGP_C3HHeJ_G0030694
 protein coding gene Chr6:93610456-93627515 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031473
 protein coding gene Chr6:94259585-94273655 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028642
 protein coding gene Chr6:86338388-86352222 (-)
CAST/EiJ MGP_CASTEiJ_G0030121
 protein coding gene Chr6:90924109-90939705 (-)
CBA/J MGP_CBAJ_G0030700
 protein coding gene Chr6:97791823-97812980 (-)
DBA/2J MGP_DBA2J_G0030853
 protein coding gene Chr6:87541609-87557280 (-)
FVB/NJ MGP_FVBNJ_G0030807
 protein coding gene Chr6:86743483-86757500 (-)
LP/J MGP_LPJ_G0030933
 protein coding gene Chr6:91810736-91830814 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030841
 protein coding gene Chr6:101878734-101896534 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031500
 protein coding gene Chr6:90661276-90675379 (-)
PWK/PhJ MGP_PWKPhJ_G0029837
 protein coding gene Chr6:86484221-86499644 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029666
 protein coding gene Chr6:89548230-89562981 (-)
WSB/EiJ MGP_WSBEiJ_G0030205
 protein coding gene Chr6:91120324-91135244 (-)



Homology
more
  • Human Ortholog
    CHST13, carbohydrate sulfotransferase 13
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CHST13, carbohydrate sulfotransferase 13
  • Synonyms
    C4ST3
  • Links
    NCBI Gene ID: 166012
    neXtProt AC: NX_Q8NET6
    UniProt: Q8NET6

  • Chr Location
    3q21.3; chr3:126524155-126543291 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    4
  • Endonuclease-mediated
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Chst13
  • Incidental Mutations
    CvDC
  • Find Mice (IMSR)
    28 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    817
  • Tissues
    108
  • cDNA Data
    4
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71797 NCBI Gene Model | MGI Sequence Detail 16835 C57BL/6J ±  kb
transcript NM_027928 RefSeq | MGI Sequence Detail 1651 C57BL/6  
polypeptide NP_082204 RefSeq | MGI Sequence Detail 336 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 4
    Primer pair 3

    Microarray probesets 1
References
more
  • Summaries
    All 30
    Developmental Gene Expression 5
    Gene Ontology 2
    Phenotypes 11
  • Earliest
    J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory