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Spag17 Gene Detail
Summary
  • Symbol
    Spag17
  • Name
    sperm associated antigen 17
  • Synonyms
    4931427F14Rik, PF6
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921612
    NCBI Gene: 74362
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:99792722-100050638 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 43.25 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4227 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921612
 protein coding gene Chr3:99792653-100050638 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027664
 protein coding gene Chr3:100998428-101263086 (+)
A/J MGP_AJ_G0027623
 protein coding gene Chr3:97780134-98042412 (+)
AKR/J MGP_AKRJ_G0027589
 protein coding gene Chr3:100140642-100419917 (+)
BALB/cJ MGP_BALBcJ_G0027636
 protein coding gene Chr3:97562221-97822397 (+)
C3H/HeJ MGP_C3HHeJ_G0027365
 protein coding gene Chr3:100466794-100737534 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028079
 protein coding gene Chr3:104688911-104980664 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025420
 protein coding gene Chr3:94022102-94270976 (+)
CAST/EiJ MGP_CASTEiJ_G0026821
 protein coding gene Chr3:99588063-99852495 (+)
CBA/J MGP_CBAJ_G0027340
 protein coding gene Chr3:108356205-108603435 (+)
DBA/2J MGP_DBA2J_G0027483
 protein coding gene Chr3:97034239-97293876 (+)
FVB/NJ MGP_FVBNJ_G0027451
 protein coding gene Chr3:94979929-95245618 (+)
LP/J MGP_LPJ_G0027590
 protein coding gene Chr3:102345435-102602137 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027481
 protein coding gene Chr3:114526693-114812525 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028134
 protein coding gene Chr3:99668540-99923395 (+)
PWK/PhJ MGP_PWKPhJ_G0026548
 protein coding gene Chr3:96793975-97049658 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026370
 protein coding gene Chr3:97770150-98045126 (+)
WSB/EiJ MGP_WSBEiJ_G0026901
 protein coding gene Chr3:100241917-100502107 (+)



Homology
more
  • Human Ortholog
    SPAG17, sperm associated antigen 17
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPAG17, sperm associated antigen 17
  • Synonyms
    CT143, PF6, SPGF55
  • Links
    NCBI Gene ID: 200162
    neXtProt AC: NX_Q6Q759
    UniProt: Q6Q759

  • Chr Location
    1p12; chr1:117953590-118185228 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human SPAG17 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    44 phenotypes from 3 alleles in 3 genetic backgrounds
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Nullizygous mice show immotile respiratory cilia, impaired mucociliary clearance, respiratory distress, pulmonary edema, disrupted alveolar epithelia, hydrocephaly and neonatal death. Males show sterility, oligospermia, immotile sperm, abnormal sperm head and tails, and altered manchette structure.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    731
  • Tissues
    14
  • cDNA Data
    6
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000027867 Ensembl Gene Model | MGI Sequence Detail 257917 C57BL/6J ±  kb
    transcript ENSMUST00000164539 Ensembl | MGI Sequence Detail 7862 Not Applicable  
    polypeptide ENSMUSP00000134066 Ensembl | MGI Sequence Detail 2320 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 6
      cDNA 6

      Microarray probesets 4
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 2
      Diseases 1
      Gene Ontology 7
      Phenotypes 16
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory