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Magec2 Gene Detail
Summary
  • Symbol
    Magec2
  • Name
    MAGE family member C2
  • Synonyms
    4933402E13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921687
    NCBI Gene: 74437
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:61327105-61335684 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.57 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    244 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921687
 protein coding gene ChrX:61326566-61335690 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035762
 protein coding gene ChrX:57689662-57698979 (+)
A/J MGP_AJ_G0035744
 protein coding gene ChrX:57893898-57902819 (+)
AKR/J MGP_AKRJ_G0035664
 protein coding gene ChrX:59476034-59484613 (+)
BALB/cJ MGP_BALBcJ_G0035731
 protein coding gene ChrX:57195356-57203936 (+)
C3H/HeJ MGP_C3HHeJ_G0035433
 protein coding gene ChrX:58254958-58263538 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036260
 protein coding gene ChrX:59292746-59301325 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033112
 protein coding gene ChrX:57569568-57578659 (+)
CAST/EiJ MGP_CASTEiJ_G0034726
 protein coding gene ChrX:43958755-43967368 (+)
CBA/J MGP_CBAJ_G0035408
 protein coding gene ChrX:61045208-61053787 (+)
DBA/2J MGP_DBA2J_G0035562
 protein coding gene ChrX:57450337-57458916 (+)
FVB/NJ MGP_FVBNJ_G0035512
 protein coding gene ChrX:56966697-56975276 (+)
LP/J MGP_LPJ_G0035650
 protein coding gene ChrX:58329872-58338451 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035548
 protein coding gene ChrX:62725719-62734296 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036276
 protein coding gene ChrX:57687826-57696405 (+)
PWK/PhJ MGP_PWKPhJ_G0034421
 protein coding gene ChrX:42104825-42113423 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034265
 protein coding gene ChrX:44844766-44853360 (+)
WSB/EiJ MGP_WSBEiJ_G0034869
 protein coding gene ChrX:57154073-57162652 (+)



Homology
more
  • Human Ortholog
    MAGEC1, MAGE family member C1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MAGEC1, MAGE family member C1
  • Synonyms
    CT7, CT7.1
  • Links
    NCBI Gene ID: 9947
    neXtProt AC: NX_O60732
    UniProt: O60732

  • Chr Location
    Xq27.2; chrX:141903894-141909374 (+)  GRCh38
  • Human Ortholog
    MAGEC2, MAGE family member C2
  • Synonyms
    CT10, HCA587, MAGEE1
  • Links
    NCBI Gene ID: 51438
    neXtProt AC: NX_Q9UBF1
    UniProt: Q9UBF1

  • Chr Location
    Xq27.2; chrX:142202342-142205290 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    759
  • Tissues
    27
  • cDNA Data
    7
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045330 Ensembl Gene Model | MGI Sequence Detail 8580 C57BL/6J ±  kb
transcript ENSMUST00000051414 Ensembl | MGI Sequence Detail 1970 Not Applicable  
polypeptide ENSMUSP00000056260 Ensembl | MGI Sequence Detail 429 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR002190 MAGE homology domain
    IPR041898 MAGE homology domain, winged helix WH1 motif
    IPR041899 MAGE homology domain, winged helix WH2 motif
    IPR037445 Melanoma-associated antigen
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
Other
Accession IDs
less
MGI:6448161
References
more
  • Summaries
    All 24
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:217593 Garcia TX, et al., RBPJ in mouse Sertoli cells is required for proper regulation of the testis stem cell niche. Development. 2014 Dec;141(23):4468-78
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory