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Knl1 Gene Detail
Summary
  • Symbol
    Knl1
  • Name
    kinetochore scaffold 1
  • Synonyms
    2310043D08Rik, 5730505K17Rik, Casc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923714
    NCBI Gene: 76464
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:118877600-118935982 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 59.85 cM, cytoband E5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1304 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923714
 protein coding gene Chr2:118877600-118940978 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026330
 protein coding gene Chr2:121778642-121838100 (+)
A/J MGP_AJ_G0026291
 protein coding gene Chr2:116819635-116879967 (+)
AKR/J MGP_AKRJ_G0026270
 protein coding gene Chr2:120090846-120150524 (+)
BALB/cJ MGP_BALBcJ_G0026304
 protein coding gene Chr2:117084771-117144143 (+)
C3H/HeJ MGP_C3HHeJ_G0026050
 protein coding gene Chr2:120560608-120622128 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026751
 protein coding gene Chr2:125773902-125840258 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024131
 protein coding gene Chr2:111873025-111932962 (+)
CAST/EiJ MGP_CASTEiJ_G0025512
 protein coding gene Chr2:120862524-120921799 (+)
CBA/J MGP_CBAJ_G0026026
 protein coding gene Chr2:130204649-130267854 (+)
DBA/2J MGP_DBA2J_G0026165
 protein coding gene Chr2:116247527-116307495 (+)
FVB/NJ MGP_FVBNJ_G0026127
 protein coding gene Chr2:115067198-115126781 (+)
LP/J MGP_LPJ_G0026266
 protein coding gene Chr2:122089610-122153341 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026146
 protein coding gene Chr2:134572507-134635553 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026806
 protein coding gene Chr2:120215159-120275779 (+)
PWK/PhJ MGP_PWKPhJ_G0025248
 protein coding gene Chr2:115801150-115860462 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025047
 protein coding gene Chr2:119396807-119460560 (+)
WSB/EiJ MGP_WSBEiJ_G0025581
 protein coding gene Chr2:121043946-121104767 (+)



Homology
more
  • Human Ortholog
    KNL1, kinetochore scaffold 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KNL1, kinetochore scaffold 1
  • Synonyms
    AF15Q14, CASC5, CT29, D40, hKNL-1, hSpc105, MCPH4, PPP1R55, Spc7
  • Links
    NCBI Gene ID: 57082
    neXtProt AC: NX_Q8NG31
    UniProt: Q8NG31

  • Chr Location
    15q15.1; chr15:40594020-40664342 (+)  GRCh38
Human Diseases
more
  • Diseases
    3 with human KNL1 associations

Human Disease Mouse Models
      
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    19 phenotypes from 4 alleles in 5 genetic backgrounds
    6 phenotypes from multigenic genotypes
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E6. Mice homozygous for a conditional allele activated in NPCs exhibit postnatal and premature death and microcephaly associated with NPC apoptosis and premature differentiation.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    3
  • cDNA Data
    14
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000027326 Ensembl Gene Model | MGI Sequence Detail 58383 C57BL/6J ±  kb
    transcript ENSMUST00000028802 Ensembl | MGI Sequence Detail 7800 Not Applicable  
    polypeptide ENSMUSP00000028802 Ensembl | MGI Sequence Detail 2119 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 14
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1917873
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 4
      Gene Ontology 9
      Phenotypes 17
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory