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Lsm8 Gene Detail
Summary
  • Symbol
    Lsm8
  • Name
    LSM8 homolog, U6 small nuclear RNA associated
  • Synonyms
    2010003I05Rik, Lsm8
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923772
    NCBI Gene: 76522
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:18848634-18854051 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 8.16 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    219 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923772
 protein coding gene Chr6:18848578-18855750 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030477
 protein coding gene Chr6:16165563-16172760 (+)
A/J MGP_AJ_G0030450
 protein coding gene Chr6:15487081-15494253 (+)
AKR/J MGP_AKRJ_G0030377
 protein coding gene Chr6:16027583-16034755 (+)
BALB/cJ MGP_BALBcJ_G0030459
 protein coding gene Chr6:15590165-15597337 (+)
C3H/HeJ MGP_C3HHeJ_G0030173
 protein coding gene Chr6:15897542-15904714 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030914
 protein coding gene Chr6:16678306-16685478 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028125
 protein coding gene Chr6:14402356-14409312 (+)
CAST/EiJ MGP_CASTEiJ_G0029575
 protein coding gene Chr6:15829640-15836789 (+)
CBA/J MGP_CBAJ_G0030151
 protein coding gene Chr6:17237896-17245068 (+)
DBA/2J MGP_DBA2J_G0030295
 protein coding gene Chr6:15418009-15425181 (+)
FVB/NJ MGP_FVBNJ_G0030249
 protein coding gene Chr6:15249974-15257146 (+)
LP/J MGP_LPJ_G0030382
 protein coding gene Chr6:16235209-16242406 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030285
 protein coding gene Chr6:18444711-18451883 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030944
 protein coding gene Chr6:15926290-15933462 (+)
PWK/PhJ MGP_PWKPhJ_G0029289
 protein coding gene Chr6:15077425-15084653 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029125
 protein coding gene Chr6:15786373-15793514 (+)
WSB/EiJ MGP_WSBEiJ_G0029651
 protein coding gene Chr6:15843998-15851171 (+)



Homology
more
  • Human Ortholog
    LSM8, LSM8 homolog, U6 small nuclear RNA associated
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LSM8, LSM8 homolog, U6 small nuclear RNA associated
  • Synonyms
    NAA38
  • Links
    NCBI Gene ID: 51691
    neXtProt AC: NX_O95777
    UniProt: O95777

  • Chr Location
    7q31.31; chr7:118184144-118204035 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    2
  • cDNA Data
    49
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 76522 NCBI Gene Model | MGI Sequence Detail 5418 C57BL/6J ±  kb
    transcript NM_133939 RefSeq | MGI Sequence Detail 768 Not Specified  
    polypeptide Q6ZWM4 UniProt | EBI | MGI Sequence Detail 96 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 50
      cDNA 49
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2141667
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 3
      Gene Ontology 5
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/29/2024
    MGI 6.24     		The Jackson Laboratory