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Spata46 Gene Detail
Summary
  • Symbol
    Spata46
  • Name
    spermatogenesis associated 46
  • Synonyms
    1700015E13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924175
    NCBI Gene: 76925
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:170136388-170139694 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 76.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    218 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924175
 protein coding gene Chr1:170136372-170139694 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016731
 protein coding gene Chr1:176001872-176005178 (+)
A/J MGP_AJ_G0016711
 protein coding gene Chr1:168827000-168830309 (+)
AKR/J MGP_AKRJ_G0016677
 protein coding gene Chr1:173893624-173896946 (+)
BALB/cJ MGP_BALBcJ_G0016672
 protein coding gene Chr1:169309704-169313026 (+)
C3H/HeJ MGP_C3HHeJ_G0016495
 protein coding gene Chr1:174139769-174143075 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017133
 protein coding gene Chr1:181835730-181839052 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014842
 protein coding gene Chr1:160564254-160567536 (+)
CAST/EiJ MGP_CASTEiJ_G0016076
 protein coding gene Chr1:173766192-173769499 (+)
CBA/J MGP_CBAJ_G0016470
 protein coding gene Chr1:188313034-188316356 (+)
DBA/2J MGP_DBA2J_G0016577
 protein coding gene Chr1:167689169-167692491 (+)
FVB/NJ MGP_FVBNJ_G0016574
 protein coding gene Chr1:166048508-166051814 (+)
LP/J MGP_LPJ_G0016648
 protein coding gene Chr1:177124315-177127621 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016600
 protein coding gene Chr1:195639853-195643162 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017170
 protein coding gene Chr1:173788492-173791801 (+)
PWK/PhJ MGP_PWKPhJ_G0015862
 protein coding gene Chr1:166924546-166927866 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015646
 protein coding gene Chr1:172549437-172552756 (+)
WSB/EiJ MGP_WSBEiJ_G0016138
 protein coding gene Chr1:173916239-173919549 (+)



Homology
more
  • Human Ortholog
    SPATA46, spermatogenesis associated 46
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATA46, spermatogenesis associated 46
  • Synonyms
    C1orf111, HSD20, TEKT2BP2
  • Links
    NCBI Gene ID: 284680
    neXtProt AC: NX_Q5T0L3
    UniProt: Q5T0L3

  • Chr Location
    1q23.3; chr1:162373203-162376854 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit reduced male fertility, teratozoospermia characterized by sperm head malformations, and impaired fertilization with lower rates of sperm-egg fusion.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    18
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 76925 NCBI Gene Model | MGI Sequence Detail 3307 C57BL/6J ±  kb
    transcript NM_001039593 RefSeq | MGI Sequence Detail 755 C57BL/6  
    polypeptide Q4FZF2 UniProt | EBI | MGI Sequence Detail 204 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 18
      cDNA 18

      Microarray probesets 5
    References
    more
    • Summaries
      All 28
      Gene Ontology 3
      Phenotypes 7
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory