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Lrrc39 Gene Detail
Summary
  • Symbol
    Lrrc39
  • Name
    leucine rich repeat containing 39
  • Synonyms
    2010005E21Rik, 9430028I06Rik, Myomasp
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924557
    NCBI Gene: 109245
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:116356622-116376783 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 50.39 cM, cytoband G2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    901 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924557
 protein coding gene Chr3:116356610-116376793 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027812
 protein coding gene Chr3:118466323-118486480 (+)
A/J MGP_AJ_G0027770
 protein coding gene Chr3:114589822-114610773 (+)
AKR/J MGP_AKRJ_G0027736
 protein coding gene Chr3:117497334-117517482 (+)
BALB/cJ MGP_BALBcJ_G0027782
 protein coding gene Chr3:114433062-114453356 (+)
C3H/HeJ MGP_C3HHeJ_G0027513
 protein coding gene Chr3:117848288-117876867 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028228
 protein coding gene Chr3:122814221-122835984 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025567
 protein coding gene Chr3:110281194-110301789 (+)
CAST/EiJ MGP_CASTEiJ_G0026969
 protein coding gene Chr3:117140123-117161797 (+)
CBA/J MGP_CBAJ_G0027488
 protein coding gene Chr3:127010319-127030445 (+)
DBA/2J MGP_DBA2J_G0027629
 protein coding gene Chr3:113820560-113840710 (+)
FVB/NJ MGP_FVBNJ_G0027597
 protein coding gene Chr3:111463938-111484788 (+)
LP/J MGP_LPJ_G0027739
 protein coding gene Chr3:120009662-120029803 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027627
 protein coding gene Chr3:134392774-134414329 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028284
 protein coding gene Chr3:117021691-117043813 (+)
PWK/PhJ MGP_PWKPhJ_G0026695
 protein coding gene Chr3:113472312-113492747 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026517
 protein coding gene Chr3:115042567-115063315 (+)
WSB/EiJ MGP_WSBEiJ_G0027049
 protein coding gene Chr3:117710623-117734141 (+)



Homology
more
  • Human Ortholog
    LRRC39, leucine rich repeat containing 39
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LRRC39, leucine rich repeat containing 39
  • Links
    NCBI Gene ID: 127495
    neXtProt AC: NX_Q96DD0
    UniProt: Q96DD0

  • Chr Location
    1p21.2; chr1:100148448-100179667 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    14
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027961 Ensembl Gene Model | MGI Sequence Detail 20162 C57BL/6J ±  kb
transcript ENSMUST00000029573 Ensembl | MGI Sequence Detail 3087 Not Applicable  
polypeptide ENSMUSP00000029573 Ensembl | MGI Sequence Detail 337 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000031360 leucine-rich repeat-containing protein 39
    (term hierarchy)
  • InterPro Domains
    IPR001611 Leucine-rich repeat
    IPR050715 Leucine-rich repeat and signaling effector domain-containing protein
    IPR050216 Leucine-rich repeat domain-containing protein
    IPR032675 Leucine-rich repeat domain superfamily
    IPR003591 Leucine-rich repeat, typical subtype
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 5
Other
Accession IDs
less
MGI:1917361
References
more
  • Summaries
    All 27
    Diseases 1
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory