About   Help   FAQ
Lrrc9 Gene Detail
Summary
  • Symbol
    Lrrc9
  • Name
    leucine rich repeat containing 9
  • Synonyms
    4921529O18Rik, 4930432K16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925507
    NCBI Gene: 78257
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:72481391-72561269 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 30.20 cM, cytoband C3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2356 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925507
 protein coding gene Chr12:72481391-72577524 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019825
 protein coding gene Chr12:72273991-72353776 (+)
A/J MGP_AJ_G0019783
 protein coding gene Chr12:69580183-69654022 (+)
AKR/J MGP_AKRJ_G0019759
 protein coding gene Chr12:71678930-71751401 (+)
BALB/cJ MGP_BALBcJ_G0019763
 protein coding gene Chr12:70066549-70141553 (+)
C3H/HeJ MGP_C3HHeJ_G0019568
 protein coding gene Chr12:72122945-72198904 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020215
 protein coding gene Chr12:74553541-74627701 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017835
 protein coding gene Chr12:67047588-67122058 (+)
CAST/EiJ MGP_CASTEiJ_G0019120
 protein coding gene Chr12:66897989-66972473 (+)
CBA/J MGP_CBAJ_G0019538
 protein coding gene Chr12:77338289-77420975 (+)
DBA/2J MGP_DBA2J_G0019654
 protein coding gene Chr12:69482832-69557552 (+)
FVB/NJ MGP_FVBNJ_G0019641
 protein coding gene Chr12:68349505-68424947 (+)
LP/J MGP_LPJ_G0019726
 protein coding gene Chr12:72284837-72363489 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019680
 protein coding gene Chr12:80507779-80598266 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020250
 protein coding gene Chr12:71177460-71253663 (+)
PWK/PhJ MGP_PWKPhJ_G0018885
 protein coding gene Chr12:63778890-63855791 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018680
 protein coding gene Chr12:65582901-65664529 (+)
WSB/EiJ MGP_WSBEiJ_G0019171
 protein coding gene Chr12:71768002-71848458 (+)



Homology
more
  • Human Ortholog
    LRRC9, leucine rich repeat containing 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LRRC9, leucine rich repeat containing 9
  • Links
    NCBI Gene ID: 341883
    UniProt: Q6ZRR7

  • Chr Location
    14q23.1; chr14:59919713-60066817 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78257 NCBI Gene Model | MGI Sequence Detail 79879 C57BL/6J ±  kb
transcript NM_001142728 RefSeq | MGI Sequence Detail 4739 Not Specified  
polypeptide Q8CDN9 UniProt | EBI | MGI Sequence Detail 1456 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 4
Other
Accession IDs
less
MGI:1923048
References
more
  • Summaries
    All 28
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory