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Tsga10ip Gene Detail
Summary
  • Symbol
    Tsga10ip
  • Name
    testis specific 10 interacting protein
  • Synonyms
    1810013N20Rik, Fam161c
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925556
    NCBI Gene: 78306
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:5440075-5452534 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 4.31 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    377 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925556
 protein coding gene Chr19:5440075-5452554 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024703
 protein coding gene Chr19:2349353-2353705 (-)
A/J MGP_AJ_G0024669
 protein coding gene Chr19:2223049-2227399 (-)
AKR/J MGP_AKRJ_G0024642
 protein coding gene Chr19:2284923-2289273 (-)
BALB/cJ MGP_BALBcJ_G0024669
 protein coding gene Chr19:2219144-2223494 (-)
C3H/HeJ MGP_C3HHeJ_G0024437
 protein coding gene Chr19:2290676-2295026 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025116
 protein coding gene Chr19:2409261-2413613 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022546
 protein coding gene Chr19:2129670-2147202 (-)
CAST/EiJ MGP_CASTEiJ_G0023909
 protein coding gene Chr19:2321066-2347308 (-)
CBA/J MGP_CBAJ_G0024409
 protein coding gene Chr19:2513048-2517402 (-)
DBA/2J MGP_DBA2J_G0024536
 protein coding gene Chr19:2203314-2208003 (-)
FVB/NJ MGP_FVBNJ_G0024503
 protein coding gene Chr19:2210768-2215120 (-)
LP/J MGP_LPJ_G0024622
 protein coding gene Chr19:2332165-2336517 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024533
 protein coding gene Chr19:2364524-2368874 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025164
 protein coding gene Chr19:2287654-2292006 (-)
PWK/PhJ MGP_PWKPhJ_G0023655
 protein coding gene Chr19:2240754-2265694 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023460
 protein coding gene Chr19:2276487-2289580 (-)
WSB/EiJ MGP_WSBEiJ_G0023971
 protein coding gene Chr19:2303378-2307728 (-)



Homology
more
  • Human Ortholog
    TSGA10IP, testis specific 10 interacting protein
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TSGA10IP, testis specific 10 interacting protein
  • Synonyms
    FAM161C
  • Links
    NCBI Gene ID: 254187
    neXtProt AC: NX_Q3SY00
    UniProt: Q3SY00

  • Chr Location
    11q13.1; chr11:65945480-65959966 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    825
  • Tissues
    15
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    2
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 78306 NCBI Gene Model | MGI Sequence Detail 12460 C57BL/6J ±  kb
transcript NM_001373978 RefSeq | MGI Sequence Detail 1708 C57BL/6  
polypeptide NP_001360907 RefSeq | MGI Sequence Detail 548 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR051655 FAM161
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory