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Ctsm Gene Detail
Summary
  • Symbol
    Ctsm
  • Name
    cathepsin M
  • Synonyms
    1600027J17Rik, Catm, Cat M
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927229
    NCBI Gene: 64139
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:61683557-61689653 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 32.74 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    260 from dbSNP Build 142
  • Strain Annotations
    17
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927229
 protein coding gene Chr13:61683553-61689697 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020662
 protein coding gene Chr13:61359335-61364635 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0020592
 protein coding gene Chr13:60845703-60851089 (-)
BALB/cJ MGP_BALBcJ_G0020613
 protein coding gene Chr13:59299946-59305771 (-)
C3H/HeJ MGP_C3HHeJ_G0020410
 protein coding gene Chr13:60600738-60607291 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021047
 protein coding gene Chr13:63204750-63210032 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018628
 protein coding gene Chr13:56844297-56849626 (-)
CAST/EiJ MGP_CASTEiJ_G0019926
 protein coding gene Chr13:60833193-60838460 (-)
CBA/J MGP_CBAJ_G0020370
 protein coding gene Chr13:65542890-65548266 (-)
DBA/2J MGP_DBA2J_G0020494
 protein coding gene Chr13:58596473-58601682 (-)
FVB/NJ MGP_FVBNJ_G0020472
 protein coding gene Chr13:58088779-58094123 (-)
LP/J MGP_LPJ_G0020570
 protein coding gene Chr13:61556048-61561400 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020502
 protein coding gene Chr13:64802386-64807611 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021090
 protein coding gene Chr13:60378231-60383581 (-)
PWK/PhJ MGP_PWKPhJ_G0019679
 protein coding gene Chr13:58646955-58652351 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019508
 protein coding gene Chr13:59319734-59325140 (-)
WSB/EiJ MGP_WSBEiJ_G0019987
 protein coding gene Chr13:60901804-60979899 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    746
  • Tissues
    29
  • cDNA Data
    31
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074871 Ensembl Gene Model | MGI Sequence Detail 6097 C57BL/6J ±  kb
transcript ENSMUST00000099451 Ensembl | MGI Sequence Detail 1457 Not Applicable  
polypeptide ENSMUSP00000097050 Ensembl | MGI Sequence Detail 333 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 33
    cDNA 31
    Primer pair 2

    Microarray probesets 5
Other
Accession IDs
less
MGI:1913854, MGI:2145210
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory