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Arl6ip6 Gene Detail
Summary
  • Symbol
    Arl6ip6
  • Name
    ADP-ribosylation factor-like 6 interacting protein 6
  • Synonyms
    2310057C01Rik, 2610529A11Rik, Aip-6
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929507
    NCBI Gene: 65103
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:53082096-53109233 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 30.69 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    748 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1929507
 protein coding gene Chr2:53081738-53109233 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025739
 protein coding gene Chr2:52581363-52614762 (+)
A/J MGP_AJ_G0025715
 protein coding gene Chr2:50538176-50572387 (+)
AKR/J MGP_AKRJ_G0025685
 protein coding gene Chr2:51984704-52014075 (+)
BALB/cJ MGP_BALBcJ_G0025710
 protein coding gene Chr2:50643503-50672780 (+)
C3H/HeJ MGP_C3HHeJ_G0025471
 protein coding gene Chr2:52008348-52039867 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026156
 protein coding gene Chr2:54106615-54144141 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023562
 protein coding gene Chr2:48507141-48536256 (+)
CAST/EiJ MGP_CASTEiJ_G0024936
 protein coding gene Chr2:52126302-52158488 (+)
CBA/J MGP_CBAJ_G0025451
 protein coding gene Chr2:56167452-56195904 (+)
DBA/2J MGP_DBA2J_G0025582
 protein coding gene Chr2:50185614-50213920 (+)
FVB/NJ MGP_FVBNJ_G0025544
 protein coding gene Chr2:49871260-49898689 (+)
LP/J MGP_LPJ_G0025670
 protein coding gene Chr2:52484879-52517154 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025575
 protein coding gene Chr2:57167767-57196884 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026214
 protein coding gene Chr2:51917943-51954620 (+)
PWK/PhJ MGP_PWKPhJ_G0024677
 protein coding gene Chr2:50074269-50103218 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024483
 protein coding gene Chr2:52148293-52179047 (+)
WSB/EiJ MGP_WSBEiJ_G0025003
 protein coding gene Chr2:52205388-52234839 (+)



Homology
more
  • Human Ortholog
    ARL6IP6, ARF like GTPase 6 interacting protein 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ARL6IP6, ARF like GTPase 6 interacting protein 6
  • Synonyms
    AIP-6, AIP6, PFAAP1
  • Links
    NCBI Gene ID: 151188
    neXtProt AC: NX_Q8N6S5
    UniProt: Q8N6S5

  • Chr Location
    2q23.3; chr2:152717647-152762396 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    757
  • Tissues
    5
  • cDNA Data
    74
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 65103 NCBI Gene Model | MGI Sequence Detail 27138 C57BL/6J ±  kb
    transcript NM_022989 RefSeq | MGI Sequence Detail 2553 C57BL/6  
    polypeptide Q8BH07 UniProt | EBI | MGI Sequence Detail 226 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000004294 ADP-ribosylation factor-like protein 6-interacting protein 6
      (term hierarchy)
    • InterPro Domains
      IPR029383 ADP-ribosylation factor-like protein 6-interacting protein 6
    Molecular
    Reagents
    less
    • All nucleic 74
      cDNA 74

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1914875, MGI:1922841
    References
    more
    • Summaries
      All 36
      Developmental Gene Expression 1
      Gene Ontology 3
      Phenotypes 10
    • Earliest
      J:62458 Ingley E, et al., A novel ADP-ribosylation like factor (ARL-6), interacts with the protein-conducting channel SEC61beta subunit. FEBS Lett. 1999 Oct 1;459(1):69-74
    • Latest
      J:351297 Ge T, et al., Coiled-coil domain containing 159 is required for spermatid head and tail assembly in mice. Biol Reprod. 2024 May 9;110(5):877-894
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory