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Smoc1 Gene Detail
Summary
  • Symbol
    Smoc1
  • Name
    SPARC related modular calcium binding 1
  • Synonyms
    2600002F22Rik, SPARC-related protein, SRG
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929878
    NCBI Gene: 64075
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:81073582-81233188 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 37.28 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4171 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1929878
 protein coding gene Chr12:81073582-81233188 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019897
 protein coding gene Chr12:81452535-81633782 (+)
A/J MGP_AJ_G0019855
 protein coding gene Chr12:78474258-78637472 (+)
AKR/J MGP_AKRJ_G0019830
 protein coding gene Chr12:80618306-80793862 (+)
BALB/cJ MGP_BALBcJ_G0019834
 protein coding gene Chr12:78721057-78883161 (+)
C3H/HeJ MGP_C3HHeJ_G0019640
 protein coding gene Chr12:81088769-81258163 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020286
 protein coding gene Chr12:83833242-84016704 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017905
 protein coding gene Chr12:75469226-75628258 (+)
CAST/EiJ MGP_CASTEiJ_G0019190
 protein coding gene Chr12:75959205-76129551 (+)
CBA/J MGP_CBAJ_G0019611
 protein coding gene Chr12:87093933-87279354 (+)
DBA/2J MGP_DBA2J_G0019726
 protein coding gene Chr12:78081641-78241562 (+)
FVB/NJ MGP_FVBNJ_G0019712
 protein coding gene Chr12:76905188-77066697 (+)
LP/J MGP_LPJ_G0019798
 protein coding gene Chr12:81360199-81535823 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019751
 protein coding gene Chr12:90087347-90271430 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020321
 protein coding gene Chr12:80152075-80321752 (+)
PWK/PhJ MGP_PWKPhJ_G0018956
 protein coding gene Chr12:72483009-72648285 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018750
 protein coding gene Chr12:74667795-74840924 (+)
WSB/EiJ MGP_WSBEiJ_G0019243
 protein coding gene Chr12:80787330-80963630 (+)



Homology
more
  • Human Ortholog
    SMOC1, SPARC related modular calcium binding 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMOC1, SPARC related modular calcium binding 1
  • Synonyms
    OAS
  • Links
    NCBI Gene ID: 64093
    neXtProt AC: NX_Q9H4F8
    UniProt: Q9H4F8

  • Chr Location
    14q24.2; chr14:69854131-70032366 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Smoc1 mouse models; 1 with human SMOC1 associations

Human Disease Mouse Models
      
IDs
 View 2 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    55 phenotypes from 3 alleles in 5 genetic backgrounds
    3 images
    21 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a transposon-induced allele exhibit ocular and limb defects. Mice homozygous for a knock-out allele exhibit neonatal lethality, osseous syndactyly, decreased body size, and iris and retina coloboma.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1243
  • Tissues
    156
  • cDNA Data
    71
  • Literature Summary
    20
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 64075 NCBI Gene Model | MGI Sequence Detail 159607 C57BL/6J ±  kb
    transcript NM_001146217 RefSeq | MGI Sequence Detail 3496 C57BL/6  
    polypeptide Q8BLY1 UniProt | EBI | MGI Sequence Detail 463 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 80
      Genomic 1
      cDNA 71
      Primer pair 7
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1917142, MGI:2144899
    References
    more
    • Summaries
      All 63
      Developmental Gene Expression 20
      Diseases 2
      Gene Ontology 6
      Phenotypes 21
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory