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Higd1a Gene Detail
Summary
  • Symbol
    Higd1a
  • Name
    HIG1 domain family, member 1A
  • Synonyms
    2210020B17Rik, 7420700H20Rik, Hig1, HIMP1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1930666
    NCBI Gene: 56295
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121677623-121686862 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.67 cM, cytoband F4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    311 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1930666
 protein coding gene Chr9:121677623-121687428 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035452
 protein coding gene Chr9:124813643-124823087 (-)
A/J MGP_AJ_G0035433
 protein coding gene Chr9:120055903-120066354 (-)
AKR/J MGP_AKRJ_G0035366
 protein coding gene Chr9:123259588-123269032 (-)
BALB/cJ MGP_BALBcJ_G0035429
 protein coding gene Chr9:119966957-119976389 (-)
C3H/HeJ MGP_C3HHeJ_G0035136
 protein coding gene Chr9:123719331-123728763 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035952
 protein coding gene Chr9:128227526-128236966 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032834
 protein coding gene Chr9:117216312-117226105 (-)
CAST/EiJ MGP_CASTEiJ_G0034441
 protein coding gene Chr9:123761520-123770920 (-)
CBA/J MGP_CBAJ_G0035104
 protein coding gene Chr9:132915295-132929381 (-)
DBA/2J MGP_DBA2J_G0035263
 protein coding gene Chr9:119501536-119510968 (-)
FVB/NJ MGP_FVBNJ_G0035210
 protein coding gene Chr9:118421261-118430693 (-)
LP/J MGP_LPJ_G0035342
 protein coding gene Chr9:125151374-125160818 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035251
 protein coding gene Chr9:133856684-133866124 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035971
 protein coding gene Chr9:123698284-123707830 (-)
PWK/PhJ MGP_PWKPhJ_G0034145
 protein coding gene Chr9:119961060-119971379 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033982
 protein coding gene Chr9:123824902-123834759 (-)
WSB/EiJ MGP_WSBEiJ_G0034561
 protein coding gene Chr9:123548777-123559996 (-)



Homology
more
  • Human Ortholog
    HIGD1A, HIG1 hypoxia inducible domain family member 1A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HIGD1A, HIG1 hypoxia inducible domain family member 1A
  • Synonyms
    HIG1, RCF1a
  • Links
    NCBI Gene ID: 25994
    neXtProt AC: NX_Q9Y241
    UniProt: Q9Y241

  • Chr Location
    3p22.1; chr3:42782908-42804490 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    8
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    3
  • cDNA Data
    48
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56295 NCBI Gene Model | MGI Sequence Detail 9240 C57BL/6J ±  kb
transcript NM_001357837 RefSeq | MGI Sequence Detail 1970 C57BL/6  
polypeptide Q9JLR9 UniProt | EBI | MGI Sequence Detail 95 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 49
    cDNA 48
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1914052, MGI:1917640, MGI:2143007, MGI:2143283
References
more
  • Summaries
    All 45
    Developmental Gene Expression 3
    Gene Ontology 8
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory