About   Help   FAQ
Sec61a2 Gene Detail
Summary
  • Symbol
    Sec61a2
  • Name
    SEC61 translocon subunit alpha 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1931071
    NCBI Gene: 57743
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:5875788-5900199 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 3.62 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    604 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1931071
 protein coding gene Chr2:5875788-5900243 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025326
 protein coding gene Chr2:3004579-3028793 (-)
A/J MGP_AJ_G0025303
 protein coding gene Chr2:2863638-2888179 (-)
AKR/J MGP_AKRJ_G0025271
 protein coding gene Chr2:2947765-2973395 (-)
BALB/cJ MGP_BALBcJ_G0025299
 protein coding gene Chr2:2842240-2866556 (-)
C3H/HeJ MGP_C3HHeJ_G0025059
 protein coding gene Chr2:2906750-2930964 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025741
 protein coding gene Chr2:3081622-3106962 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023155
 protein coding gene Chr2:2673109-2697049 (-)
CAST/EiJ MGP_CASTEiJ_G0024522
 protein coding gene Chr2:2949936-2974197 (-)
CBA/J MGP_CBAJ_G0025038
 protein coding gene Chr2:3216927-3241141 (-)
DBA/2J MGP_DBA2J_G0025170
 protein coding gene Chr2:2806894-2831108 (-)
FVB/NJ MGP_FVBNJ_G0025132
 protein coding gene Chr2:2807012-2831171 (-)
LP/J MGP_LPJ_G0025256
 protein coding gene Chr2:2950184-2974398 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025164
 protein coding gene Chr2:3061903-3089948 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025799
 protein coding gene Chr2:2941475-2965829 (-)
PWK/PhJ MGP_PWKPhJ_G0024273
 protein coding gene Chr2:2801539-2825733 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024073
 protein coding gene Chr2:2922649-2946878 (-)
WSB/EiJ MGP_WSBEiJ_G0024592
 protein coding gene Chr2:2972757-3000544 (-)



Homology
more
  • Human Ortholog
    SEC61A2, SEC61 translocon subunit alpha 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SEC61A2, SEC61 translocon subunit alpha 2
  • Links
    NCBI Gene ID: 55176
    neXtProt AC: NX_Q9H9S3
    UniProt: Q9H9S3

  • Chr Location
    10p14; chr10:12129637-12169961 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    70
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 57743 NCBI Gene Model | MGI Sequence Detail 24412 C57BL/6J ±  kb
    transcript NR_185335 RefSeq | MGI Sequence Detail 2522 C57BL/6  
    polypeptide Q9JLR1 UniProt | EBI | MGI Sequence Detail 476 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 70
      cDNA 70

      Microarray probesets 4
    References
    more
    • Summaries
      All 36
      Gene Ontology 4
      Phenotypes 12
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory