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Pcdhgb8 Pseudogene Detail
Summary
  • Symbol
    Pcdhgb8
  • Name
    protocadherin gamma subfamily B, 8
Location &
Maps
more
  • Sequence Map
    Chr18:37894854-37973542 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 19.63 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2156 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1935200
 polymorphic pseudogene Chr18:37894854-37974923 (+)
129S1/SvImJ MGP_129S1SvImJ_G0009940
 polymorphic pseudogene Chr18:36169377-36259974 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0010157
 polymorphic pseudogene Chr18:37469332-37559699 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0009658
 polymorphic pseudogene Chr18:35892309-35977831 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0009860
 polymorphic pseudogene Chr18:34239946-34321588 (+)
LP/J MGP_LPJ_G0009937
 polymorphic pseudogene Chr18:36239546-36321810 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0009826
 polymorphic pseudogene Chr18:39842927-39929362 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0010128
 polymorphic pseudogene Chr18:35741836-35837201 (+)
PWK/PhJ MGP_PWKPhJ_G0009579
 polymorphic pseudogene Chr18:34734490-34819111 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0009762
 polymorphic pseudogene Chr18:35646861-35737851 (+)



Homology
more
  • Human Ortholog
    PCDHGB3, protocadherin gamma subfamily B, 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCDHGB3, protocadherin gamma subfamily B, 3
  • Synonyms
    PCDH-GAMMA-B3
  • Links
    NCBI Gene ID: 56102
    neXtProt AC: NX_Q9Y5G1
    UniProt: Q9Y5G1

  • Chr Location
    5q31.3; chr5:141370242-141512975 (+)  GRCh38
  • Human Ortholog
    PCDHGB8P, protocadherin gamma subfamily B, 8 pseudogene
  • Synonyms
    PCDH-PSI3
  • Links
    NCBI Gene ID: 56120

  • Chr Location
    5q31.3; chr5:141426286-141429158 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    2
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93705 NCBI Gene Model | MGI Sequence Detail 78689 C57BL/6J ±  kb
transcript NM_033580 RefSeq | MGI Sequence Detail 3234 Not Specified  
polypeptide NP_291058 RefSeq | MGI Sequence Detail 931 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR020894 Cadherin conserved site
    IPR031904 Cadherin, C-terminal catenin-binding domain
    IPR032455 Cadherin, cytoplasmic C-terminal domain
    IPR002126 Cadherin-like
    IPR015919 Cadherin-like superfamily
    IPR013164 Cadherin, N-terminal
    IPR050174 Protocadherin/Cadherin-related Cell Adhesion
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 2
    Primer pair 2
References
more
  • Summaries
    All 18
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:332241 Kobayashi H, et al., Isoform requirement of clustered protocadherin for preventing neuronal apoptosis and neonatal lethality. iScience. 2023 Jan 20;26(1):105766
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory