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Fkbp6 Gene Detail
Summary
  • Symbol
    Fkbp6
  • Name
    FK506 binding protein 6
  • Synonyms
    1700008G22Rik, D5Ertd724e
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137612
    NCBI Gene: 94244
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:135320558-135378898 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 75.11 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1665 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2137612
 protein coding gene Chr5:135320558-135380662 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030179
 protein coding gene Chr5:139812636-139871599 (-)
A/J MGP_AJ_G0030147
 protein coding gene Chr5:133825514-133884046 (-)
AKR/J MGP_AKRJ_G0030080
 protein coding gene Chr5:138174238-138234690 (-)
BALB/cJ MGP_BALBcJ_G0030157
 protein coding gene Chr5:135181912-135240245 (-)
C3H/HeJ MGP_C3HHeJ_G0029873
 protein coding gene Chr5:138743090-138803869 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030610
 protein coding gene Chr5:145031101-145091552 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027833
 protein coding gene Chr5:128123133-128183513 (-)
CAST/EiJ MGP_CASTEiJ_G0029282
 protein coding gene Chr5:138152253-138213798 (-)
CBA/J MGP_CBAJ_G0029843
 protein coding gene Chr5:150723075-150787411 (-)
DBA/2J MGP_DBA2J_G0029994
 protein coding gene Chr5:133721204-133795042 (-)
FVB/NJ MGP_FVBNJ_G0029949
 protein coding gene Chr5:132858166-132921373 (-)
LP/J MGP_LPJ_G0030082
 protein coding gene Chr5:140264876-140327375 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029981
 protein coding gene Chr5:153723114-153784303 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030650
 protein coding gene Chr5:137921849-137979326 (-)
PWK/PhJ MGP_PWKPhJ_G0028997
 protein coding gene Chr5:132767482-132829016 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028832
 protein coding gene Chr5:135484563-135545858 (-)
WSB/EiJ MGP_WSBEiJ_G0029356
 protein coding gene Chr5:138669603-138734226 (-)



Homology
more
  • Human Ortholog
    FKBP6, FKBP prolyl isomerase family member 6 (inactive)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FKBP6, FKBP prolyl isomerase family member 6 (inactive)
  • Synonyms
    FKBP36, SPGF77
  • Links
    NCBI Gene ID: 8468
    neXtProt AC: NX_O75344
    UniProt: O75344

  • Chr Location
    7q11.23; chr7:73328161-73358637 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with human FKBP6 associations

Human Disease Mouse Models
      
IDs
IDs
 View 2 models
Click on a disease name to see all genes associated with that disease.

  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotypes from 2 alleles in 2 genetic backgrounds
    21 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit azoospermia and male infertility associated with arrest of male meiosis at the pachytene stage, and increased apoptosis of meiotic spermatocytes.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    726
  • Tissues
    11
  • cDNA Data
    14
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040013 Ensembl Gene Model | MGI Sequence Detail 58341 C57BL/6J ±  kb
    transcript ENSMUST00000044972 Ensembl | MGI Sequence Detail 1447 Not Applicable  
    polypeptide ENSMUSP00000043193 Ensembl | MGI Sequence Detail 327 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000007542 peptidyl-prolyl cis-trans isomerase FKBP6
      (term hierarchy)
    • InterPro Domains
      IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain
      IPR042282 Inactive peptidyl-prolyl cis-trans isomerase FKBP6/shutdown
      IPR046357 Peptidyl-prolyl cis-trans isomerase domain superfamily
      IPR011990 Tetratricopeptide-like helical domain superfamily
      IPR019734 Tetratricopeptide repeat
    Molecular
    Reagents
    less
    • All nucleic 23
      Genomic 5
      cDNA 14
      Primer pair 3
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1289148, MGI:1922705, MGI:2141034
    References
    more
    • Summaries
      All 54
      Developmental Gene Expression 4
      Diseases 2
      Gene Ontology 7
      Phenotypes 21
    • Earliest
      J:30020 Coss MC, et al., Molecular cloning, DNA sequence analysis, and biochemical characterization of a novel 65-kDa FK506-binding protein (FKBP65). J Biol Chem. 1995 Dec 8;270(49):29336-41
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory