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Hnrnpf Gene Detail
Summary
  • Symbol
    Hnrnpf
  • Name
    heterogeneous nuclear ribonucleoprotein F
  • Synonyms
    4833420I20Rik, Hnrpf
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138741
    NCBI Gene: 98758
  • Alliance
    gene page
  • Transcription Start Sites
    22 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:117877301-117902583 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 55.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    689 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138741
 protein coding gene Chr6:117877285-117902583 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031180
 protein coding gene Chr6:120618296-120643918 (+)
A/J MGP_AJ_G0028233
 protein coding gene Chr4:45017727-45019953 (-)
AKR/J MGP_AKRJ_G0031080
 protein coding gene Chr6:119127721-119154438 (+)
BALB/cJ MGP_BALBcJ_G0031160
 protein coding gene Chr6:115801905-115810510 (+)
C3H/HeJ MGP_C3HHeJ_G0030549
 protein coding gene Chr6:65146029-65176350 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031618
 protein coding gene Chr6:123725521-123754636 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0030267
 protein coding gene Chr6:119500286-119528672 (+)
CBA/J MGP_CBAJ_G0024400
 protein coding gene Chr19:2206369-2207215 (-)
DBA/2J MGP_DBA2J_G0035508
 protein coding gene ChrX:45174183-45175927 (-)
FVB/NJ MGP_FVBNJ_G0019390
 protein coding gene Chr12:1429060-1430804 (-)
LP/J MGP_LPJ_G0031078
 protein coding gene Chr6:120647657-120674828 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035495
 protein coding gene ChrX:49359586-49362190 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031647
 protein coding gene Chr6:119152070-119177681 (+)
PWK/PhJ MGP_PWKPhJ_G0018606
 protein coding gene Chr11:120834804-120836028 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0030350
 protein coding gene Chr6:119416885-119446835 (+)



Homology
more
  • Human Ortholog
    HNRNPF, heterogeneous nuclear ribonucleoprotein F
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HNRNPF, heterogeneous nuclear ribonucleoprotein F
  • Synonyms
    HNRPF, mcs94-1, OK/SW-cl.23
  • Links
    NCBI Gene ID: 3185
    neXtProt AC: NX_P52597
    UniProt: P52597

  • Chr Location
    10q11.21; chr10:43385617-43409186 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Hnrnpf mouse models

Human Disease Mouse Models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    24
  • cDNA Data
    12
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 98758 NCBI Gene Model | MGI Sequence Detail 25283 C57BL/6J ±  kb
    transcript NM_001166430 RefSeq | MGI Sequence Detail 2548 C57BL/6  
    polypeptide Q9Z2X1 UniProt | EBI | MGI Sequence Detail 415 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 14
      cDNA 12
      Primer pair 2

      Microarray probesets 7
    References
    more
    • Summaries
      All 47
      Developmental Gene Expression 5
      Diseases 1
      Gene Ontology 8
      Phenotypes 10
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:338313 Korff A, et al., A murine model of hnRNPH2-related neurodevelopmental disorder reveals a mechanism for genetic compensation by Hnrnph1. J Clin Invest. 2023 Jul 17;133(14)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory