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C87436 Gene Detail
Summary
  • Symbol
    C87436
  • Name
    expressed sequence C87436
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141787
    NCBI Gene: 232196
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:86415356-86450482 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 37.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    839 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141787
 protein coding gene Chr6:86411616-86450482 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030977
 protein coding gene Chr6:87723502-87761149 (+)
A/J MGP_AJ_G0030943
 protein coding gene Chr6:84339927-84376249 (+)
AKR/J MGP_AKRJ_G0030874
 protein coding gene Chr6:86783313-86822918 (+)
BALB/cJ MGP_BALBcJ_G0030956
 protein coding gene Chr6:84348639-84383247 (+)
C3H/HeJ MGP_C3HHeJ_G0030754
 protein coding gene Chr6:97645378-97680417 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031413
 protein coding gene Chr6:90105588-90145299 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028597
 protein coding gene Chr6:82516143-82549616 (+)
CAST/EiJ MGP_CASTEiJ_G0030065
 protein coding gene Chr6:86850496-86889000 (+)
CBA/J MGP_CBAJ_G0030640
 protein coding gene Chr6:93652265-93689493 (+)
DBA/2J MGP_DBA2J_G0030796
 protein coding gene Chr6:83658267-83693689 (+)
FVB/NJ MGP_FVBNJ_G0030749
 protein coding gene Chr6:82839903-82877138 (+)
LP/J MGP_LPJ_G0030873
 protein coding gene Chr6:87762761-87801213 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030782
 protein coding gene Chr6:97778312-97815098 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031440
 protein coding gene Chr6:86626488-86661117 (+)
PWK/PhJ MGP_PWKPhJ_G0029780
 protein coding gene Chr6:82599132-82636229 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029608
 protein coding gene Chr6:85462978-85500218 (+)
WSB/EiJ MGP_WSBEiJ_G0030146
 protein coding gene Chr6:87077568-87115619 (+)



Homology
more
  • Human Ortholog
    C2orf42, chromosome 2 open reading frame 42
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C2orf42, chromosome 2 open reading frame 42
  • Links
    NCBI Gene ID: 54980
    neXtProt AC: NX_Q9NWW7
    UniProt: Q9NWW7

  • Chr Location
    2p13.3; chr2:70149885-70248615 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    55
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000046679 Ensembl Gene Model | MGI Sequence Detail 35127 C57BL/6J ±  kb
transcript ENSMUST00000113700 Ensembl | MGI Sequence Detail 2523 Not Applicable  
polypeptide ENSMUSP00000109330 Ensembl | MGI Sequence Detail 574 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 55
    cDNA 55

    Microarray probesets 5
References
more
  • Summaries
    All 31
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory