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Slain1 Gene Detail
Summary
  • Symbol
    Slain1
  • Name
    SLAIN motif family, member 1
  • Synonyms
    9630044O09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145578
    NCBI Gene: 105439
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:103887664-103942343 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 52.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1934 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145578
 protein coding gene Chr14:103887664-103942343 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021632
 protein coding gene Chr14:100170169-100226184 (+)
A/J MGP_AJ_G0021590
 protein coding gene Chr14:96846188-96899980 (+)
AKR/J MGP_AKRJ_G0021566
 protein coding gene Chr14:99764133-99818984 (+)
BALB/cJ MGP_BALBcJ_G0021596
 protein coding gene Chr14:97197740-97251651 (+)
C3H/HeJ MGP_C3HHeJ_G0021374
 protein coding gene Chr14:99646895-99702056 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022036
 protein coding gene Chr14:104202122-104255703 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019576
 protein coding gene Chr14:93705233-93763830 (+)
CAST/EiJ MGP_CASTEiJ_G0020891
 protein coding gene Chr14:96983118-97042648 (+)
CBA/J MGP_CBAJ_G0021342
 protein coding gene Chr14:107946327-108002258 (+)
DBA/2J MGP_DBA2J_G0021466
 protein coding gene Chr14:96342027-96398006 (+)
FVB/NJ MGP_FVBNJ_G0021443
 protein coding gene Chr14:95317124-95371847 (+)
LP/J MGP_LPJ_G0021534
 protein coding gene Chr14:100976828-101032896 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021470
 protein coding gene Chr14:110809251-110867485 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022059
 protein coding gene Chr14:99277732-99332110 (+)
PWK/PhJ MGP_PWKPhJ_G0020634
 protein coding gene Chr14:93342128-93398094 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020472
 protein coding gene Chr14:95310778-95366315 (+)
WSB/EiJ MGP_WSBEiJ_G0020944
 protein coding gene Chr14:99932691-99991734 (+)



Homology
more
  • Human Ortholog
    SLAIN1, SLAIN motif family member 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLAIN1, SLAIN motif family member 1
  • Synonyms
    C13orf32
  • Links
    NCBI Gene ID: 122060
    neXtProt AC: NX_Q8ND83
    UniProt: Q8ND83

  • Chr Location
    13q22.3; chr13:77697687-77764242 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    863
  • Tissues
    111
  • cDNA Data
    8
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 105439 NCBI Gene Model | MGI Sequence Detail 54680 C57BL/6J ±  kb
transcript NM_001361639 RefSeq | MGI Sequence Detail 3025 C57BL/6  
polypeptide Q68FF7 UniProt | EBI | MGI Sequence Detail 579 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000031919 SLAIN motif-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR026179 SLAIN motif-containing protein
  • GlyGen
    Q68FF7 6 sites, 2 N-linked glycans (2 sites), 1 O-linked glycan (4 sites)
Molecular
Reagents
less
  • All nucleic 11
    cDNA 8
    Primer pair 2
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2145843
References
more
  • Summaries
    All 31
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:191249 van der Vaart B, et al., Microtubule plus-end tracking proteins SLAIN1/2 and ch-TOG promote axonal development. J Neurosci. 2012 Oct 17;32(42):14722-8
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory