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Tigd5 Gene Detail
Summary
  • Symbol
    Tigd5
  • Name
    tigger transposable element derived 5
  • Synonyms
    FLJ14926
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145902
    NCBI Gene: 105734
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:75781584-75786384 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 35.07 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    150 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145902
 protein coding gene Chr15:75781584-75786384 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021964
 protein coding gene Chr15:75957592-75963912 (+)
A/J MGP_AJ_G0021922
 protein coding gene Chr15:73191668-73196466 (+)
AKR/J MGP_AKRJ_G0021905
 protein coding gene Chr15:75170486-75175292 (+)
BALB/cJ MGP_BALBcJ_G0021931
 protein coding gene Chr15:73212426-73217265 (+)
C3H/HeJ MGP_C3HHeJ_G0021703
 protein coding gene Chr15:75231486-75236268 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022371
 protein coding gene Chr15:78795818-78800603 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019902
 protein coding gene Chr15:69864583-69869388 (+)
CAST/EiJ MGP_CASTEiJ_G0021222
 protein coding gene Chr15:76014414-76019199 (+)
CBA/J MGP_CBAJ_G0021670
 protein coding gene Chr15:81310306-81315078 (+)
DBA/2J MGP_DBA2J_G0021795
 protein coding gene Chr15:72722736-72727518 (+)
FVB/NJ MGP_FVBNJ_G0021776
 protein coding gene Chr15:71772954-71778195 (+)
LP/J MGP_LPJ_G0021866
 protein coding gene Chr15:76039038-76045467 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021800
 protein coding gene Chr15:86613659-86618440 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022391
 protein coding gene Chr15:75415104-75419885 (+)
PWK/PhJ MGP_PWKPhJ_G0020963
 protein coding gene Chr15:72859560-72864352 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020802
 protein coding gene Chr15:75144806-75149845 (+)
WSB/EiJ MGP_WSBEiJ_G0021274
 protein coding gene Chr15:75502411-75507192 (+)



Homology
more
  • Human Ortholog
    TIGD5, tigger transposable element derived 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TIGD5, tigger transposable element derived 5
  • Links
    NCBI Gene ID: 84948
    neXtProt AC: NX_Q53EQ6
    UniProt: Q53EQ6

  • Chr Location
    8q24.3; chr8:143597831-143603224 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    792
  • Tissues
    84
  • cDNA Data
    22
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 105734 NCBI Gene Model | MGI Sequence Detail 4801 C57BL/6J ±  kb
transcript NM_178646 RefSeq | MGI Sequence Detail 4851 C57BL/6  
polypeptide Q499M4 UniProt | EBI | MGI Sequence Detail 642 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000034593 tigger transposable element derived 5
    (term hierarchy)
  • InterPro Domains
    IPR050863 Centromere and Transposable Element-Derived Protein
    IPR004875 DDE superfamily endonuclease domain
    IPR007889 DNA binding HTH domain, Psq-type
    IPR009057 Homeobox-like domain superfamily
    IPR006600 HTH CenpB-type DNA-binding domain
    IPR036388 Winged helix-like DNA-binding domain superfamily
Molecular
Reagents
less
  • All nucleic 23
    cDNA 22
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2145904, MGI:2146054
References
more
  • Summaries
    All 55
    Developmental Gene Expression 5
    Diseases 1
    Gene Ontology 3
    Phenotypes 23
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory