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Gnptg Gene Detail
Summary
  • Symbol
    Gnptg
  • Name
    N-acetylglucosamine-1-phosphotransferase, gamma subunit
  • Feature Type
    protein coding gene
  • IDs
    MGI:2147006
    NCBI Gene: 214505
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:25452305-25459098 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 12.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    188 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147006
 protein coding gene Chr17:25451324-25459302 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023345
 protein coding gene Chr17:24283339-24290964 (-)
A/J MGP_AJ_G0023304
 protein coding gene Chr17:23604993-23610733 (-)
AKR/J MGP_AKRJ_G0023270
 protein coding gene Chr17:23694693-23701664 (-)
BALB/cJ MGP_BALBcJ_G0023309
 protein coding gene Chr17:23801708-23809282 (-)
C3H/HeJ MGP_C3HHeJ_G0023069
 protein coding gene Chr17:24071289-24077820 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023751
 protein coding gene Chr17:25344698-25354209 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021227
 protein coding gene Chr17:21066302-21073186 (-)
CAST/EiJ MGP_CASTEiJ_G0022571
 protein coding gene Chr17:23920142-23926824 (-)
CBA/J MGP_CBAJ_G0023044
 protein coding gene Chr17:26210240-26216765 (-)
DBA/2J MGP_DBA2J_G0023174
 protein coding gene Chr17:23190411-23196117 (-)
FVB/NJ MGP_FVBNJ_G0023144
 protein coding gene Chr17:22918947-22925834 (-)
LP/J MGP_LPJ_G0023251
 protein coding gene Chr17:24576606-24583577 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023163
 protein coding gene Chr17:25871273-25878250 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023791
 protein coding gene Chr17:23982455-23988139 (-)
PWK/PhJ MGP_PWKPhJ_G0022320
 protein coding gene Chr17:21953196-21959994 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022138
 protein coding gene Chr17:22051460-22060612 (-)
WSB/EiJ MGP_WSBEiJ_G0022634
 protein coding gene Chr17:24056715-24062737 (-)



Homology
more
  • Human Ortholog
    GNPTG, N-acetylglucosamine-1-phosphate transferase subunit gamma
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GNPTG, N-acetylglucosamine-1-phosphate transferase subunit gamma
  • Synonyms
    C16orf27, GNPTAG, LP2537, RJD9
  • Links
    NCBI Gene ID: 84572
    neXtProt AC: NX_Q9UJJ9
    UniProt: Q9UJJ9

  • Chr Location
    16p13.3; chr16:1351931-1365737 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with human GNPTG associations

Human Disease Mouse Models
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotypes from 2 alleles in 2 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show a partial loss of lysosomal enzyme phosphorylation.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    722
  • Tissues
    14
  • cDNA Data
    6
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035521 Ensembl Gene Model | MGI Sequence Detail 6794 C57BL/6J ±  kb
    transcript ENSMUST00000115154 Ensembl | MGI Sequence Detail 2249 Not Applicable  
    polypeptide ENSMUSP00000110807 Ensembl | MGI Sequence Detail 314 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 6
      Primer pair 1

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:2147005
    References
    more
    • Summaries
      All 35
      Developmental Gene Expression 1
      Gene Ontology 6
      Phenotypes 15
    • Earliest
      J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory