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Rbm27 Gene Detail
Summary
  • Symbol
    Rbm27
  • Name
    RNA binding motif protein 27
  • Synonyms
    mKIAA1311, Psc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2147194
    NCBI Gene: 225432
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:42408418-42474607 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 22.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    929 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147194
 protein coding gene Chr18:42408386-42474607 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024379
 protein coding gene Chr18:40897672-40967413 (+)
A/J MGP_AJ_G0024346
 protein coding gene Chr18:39489354-39559343 (+)
AKR/J MGP_AKRJ_G0024315
 protein coding gene Chr18:40574117-40641146 (+)
BALB/cJ MGP_BALBcJ_G0024346
 protein coding gene Chr18:39571431-39637553 (+)
C3H/HeJ MGP_C3HHeJ_G0024112
 protein coding gene Chr18:40629634-40698729 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024788
 protein coding gene Chr18:42359127-42431833 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022226
 protein coding gene Chr18:39315119-39381388 (+)
CAST/EiJ MGP_CASTEiJ_G0023587
 protein coding gene Chr18:40581205-40652510 (+)
CBA/J MGP_CBAJ_G0024082
 protein coding gene Chr18:43614915-43696360 (+)
DBA/2J MGP_DBA2J_G0024212
 protein coding gene Chr18:39071104-39140516 (+)
FVB/NJ MGP_FVBNJ_G0024178
 protein coding gene Chr18:38710765-38776263 (+)
LP/J MGP_LPJ_G0024296
 protein coding gene Chr18:40971159-41044052 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024209
 protein coding gene Chr18:44871790-44952356 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024837
 protein coding gene Chr18:40446789-40515570 (+)
PWK/PhJ MGP_PWKPhJ_G0023331
 protein coding gene Chr18:39282117-39353937 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023136
 protein coding gene Chr18:40694075-40760002 (+)
WSB/EiJ MGP_WSBEiJ_G0023650
 protein coding gene Chr18:40355735-40425888 (+)



Homology
more
  • Human Ortholog
    RBM27, RNA binding motif protein 27
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM27, RNA binding motif protein 27
  • Synonyms
    ARRS1, Psc1, ZC3H18, ZC3H20
  • Links
    NCBI Gene ID: 54439
    neXtProt AC: NX_Q9P2N5
    UniProt: Q9P2N5

  • Chr Location
    5q32; chr5:146203605-146289223 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    35
  • cDNA Data
    67
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024491 Ensembl Gene Model | MGI Sequence Detail 66190 C57BL/6J ±  kb
transcript ENSMUST00000236240 Ensembl | MGI Sequence Detail 6301 Not Applicable  
polypeptide ENSMUSP00000158063 Ensembl | MGI Sequence Detail 1060 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 69
    cDNA 67
    Primer pair 1
    Other 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2159404
References
more
  • Summaries
    All 36
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:74514 Pelton TA, et al., Transient pluripotent cell populations during primitive ectoderm formation: correlation of in vivo and in vitro pluripotent cell development. J Cell Sci. 2002 Jan 15;115(Pt 2):329-39
  • Latest
    J:304253 Jones MR, et al., A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b Signaling on Epithelial Tip Progenitor Cells During Early Mouse Lung Branching Morphogenesis. Front Genet. 2018;9:746
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory