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Rbm39 Gene Detail
Summary
  • Symbol
    Rbm39
  • Name
    RNA binding motif protein 39
  • Synonyms
    1500012C14Rik, 2310040E03Rik, B330012G18Rik, caper, Caper alpha, Rnpc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2157953
    NCBI Gene: 170791
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:155989159-156022158 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 77.36 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    716 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2157953
 protein coding gene Chr2:155989159-156022649 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026760
 protein coding gene Chr2:161009312-161052801 (-)
A/J MGP_AJ_G0026726
 protein coding gene Chr2:154622524-154657110 (-)
AKR/J MGP_AKRJ_G0026697
 protein coding gene Chr2:159105112-159138745 (-)
BALB/cJ MGP_BALBcJ_G0026735
 protein coding gene Chr2:154907691-154944229 (-)
C3H/HeJ MGP_C3HHeJ_G0026478
 protein coding gene Chr2:159464571-159498735 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027184
 protein coding gene Chr2:165739364-165777823 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024554
 protein coding gene Chr2:148107222-148138707 (-)
CAST/EiJ MGP_CASTEiJ_G0025939
 protein coding gene Chr2:159792977-159829842 (-)
CBA/J MGP_CBAJ_G0026455
 protein coding gene Chr2:171763890-171803807 (-)
DBA/2J MGP_DBA2J_G0026592
 protein coding gene Chr2:153794089-153827387 (-)
FVB/NJ MGP_FVBNJ_G0026559
 protein coding gene Chr2:152167493-152201025 (-)
LP/J MGP_LPJ_G0026697
 protein coding gene Chr2:161143422-161178603 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026580
 protein coding gene Chr2:175711815-175745825 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027240
 protein coding gene Chr2:158979287-159014710 (-)
PWK/PhJ MGP_PWKPhJ_G0025673
 protein coding gene Chr2:153294642-153329052 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025476
 protein coding gene Chr2:157919255-157952297 (-)
WSB/EiJ MGP_WSBEiJ_G0026009
 protein coding gene Chr2:159868394-159905638 (-)



Homology
more
  • Human Ortholog
    RBM39, RNA binding motif protein 39
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM39, RNA binding motif protein 39
  • Synonyms
    CAPER, CAPERalpha, FSAP59, HCC1, RNPC2
  • Links
    NCBI Gene ID: 9584
    neXtProt AC: NX_Q14498
    UniProt: Q14498

  • Chr Location
    20q11.22; chr20:35701347-35742312 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous disruption of this locus results in embryonic lethality.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    24
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    783
  • Tissues
    70
  • cDNA Data
    26
  • Literature Summary
    11
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027620 Ensembl Gene Model | MGI Sequence Detail 33000 C57BL/6J ±  kb
transcript ENSMUST00000109587 Ensembl | MGI Sequence Detail 2810 Not Applicable  
polypeptide ENSMUSP00000105216 Ensembl | MGI Sequence Detail 530 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    Genomic 1
    cDNA 32
    Primer pair 1

    Microarray probesets 12
Other
Accession IDs
less
MGI:1914382, MGI:1923702, MGI:2139486, MGI:2139542, MGI:2443989
References
more
  • Summaries
    All 51
    Developmental Gene Expression 11
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory