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Gin1 Gene Detail
Summary
  • Symbol
    Gin1
  • Name
    gypsy retrotransposon integrase 1
  • Synonyms
    4930429M06, 4930429M06Rik, Zh2c2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2182036
    NCBI Gene: 252876
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:97697897-97721434 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 47.76 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    727 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2182036
 protein coding gene Chr1:97697894-97721435 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016360
 protein coding gene Chr1:99547762-99570117 (+)
A/J MGP_AJ_G0016344
 protein coding gene Chr1:96057605-96080354 (+)
AKR/J MGP_AKRJ_G0016304
 protein coding gene Chr1:98835968-98859033 (+)
BALB/cJ MGP_BALBcJ_G0016300
 protein coding gene Chr1:96218410-96239581 (+)
C3H/HeJ MGP_C3HHeJ_G0016127
 protein coding gene Chr1:99133892-99154410 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016759
 protein coding gene Chr1:103490030-103517279 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014477
 protein coding gene Chr1:90331740-90351038 (+)
CAST/EiJ MGP_CASTEiJ_G0015709
 protein coding gene Chr1:98252170-98275536 (+)
CBA/J MGP_CBAJ_G0016100
 protein coding gene Chr1:106877615-106906390 (+)
DBA/2J MGP_DBA2J_G0016205
 protein coding gene Chr1:95266373-95287625 (+)
FVB/NJ MGP_FVBNJ_G0016206
 protein coding gene Chr1:94260099-94283751 (+)
LP/J MGP_LPJ_G0016279
 protein coding gene Chr1:100834146-100858660 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016232
 protein coding gene Chr1:110605579-110630153 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016798
 protein coding gene Chr1:98845939-98872398 (+)
PWK/PhJ MGP_PWKPhJ_G0015497
 protein coding gene Chr1:94452125-94474717 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015281
 protein coding gene Chr1:97684645-97706124 (+)
WSB/EiJ MGP_WSBEiJ_G0015772
 protein coding gene Chr1:98681474-98708134 (+)



Homology
more
  • Human Ortholog
    GIN1, gypsy retrotransposon integrase 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GIN1, gypsy retrotransposon integrase 1
  • Synonyms
    GIN-1, TGIN1, ZH2C2
  • Links
    NCBI Gene ID: 54826
    neXtProt AC: NX_Q9NXP7
    UniProt: Q9NXP7

  • Chr Location
    5q21.1; chr5:103086000-103120138 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    31
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026333 Ensembl Gene Model | MGI Sequence Detail 23538 C57BL/6J ±  kb
    transcript ENSMUST00000112844 Ensembl | MGI Sequence Detail 2046 Not Applicable  
    polypeptide ENSMUSP00000108464 Ensembl | MGI Sequence Detail 518 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 31
      cDNA 31

      Microarray probesets 6
    References
    more
    • Summaries
      All 33
      Gene Ontology 1
      Phenotypes 13
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory