About   Help   FAQ
Trim41 Gene Detail
Summary
  • Symbol
    Trim41
  • Name
    tripartite motif-containing 41
  • Synonyms
    MGC:28280, RINCK
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384814
    NCBI Gene: 211007
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:48697231-48708180 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 28.78 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384814
 protein coding gene Chr11:48697230-48709026 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018205
 protein coding gene Chr11:47834438-47846788 (-)
A/J MGP_AJ_G0018176
 protein coding gene Chr11:45930325-45941274 (-)
AKR/J MGP_AKRJ_G0018142
 protein coding gene Chr11:47353373-47364313 (-)
BALB/cJ MGP_BALBcJ_G0018145
 protein coding gene Chr11:46144140-46155274 (-)
C3H/HeJ MGP_C3HHeJ_G0017959
 protein coding gene Chr11:47363670-47380995 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018599
 protein coding gene Chr11:49270162-49281142 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016254
 protein coding gene Chr11:43795342-43806420 (-)
CAST/EiJ MGP_CASTEiJ_G0017522
 protein coding gene Chr11:47526488-47540337 (-)
CBA/J MGP_CBAJ_G0017931
 protein coding gene Chr11:51530926-51544324 (-)
DBA/2J MGP_DBA2J_G0018041
 protein coding gene Chr11:45784738-45796038 (-)
FVB/NJ MGP_FVBNJ_G0018035
 protein coding gene Chr11:45378458-45389366 (-)
LP/J MGP_LPJ_G0018113
 protein coding gene Chr11:48077544-48089987 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018059
 protein coding gene Chr11:52989682-53002293 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018638
 protein coding gene Chr11:47519427-47533508 (-)
PWK/PhJ MGP_PWKPhJ_G0017302
 protein coding gene Chr11:46178778-46190515 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017095
 protein coding gene Chr11:47252819-47263906 (-)
WSB/EiJ MGP_WSBEiJ_G0017572
 protein coding gene Chr11:47151296-47162242 (-)



Homology
more
  • Human Ortholog
    TRIM41, tripartite motif containing 41
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM41, tripartite motif containing 41
  • Synonyms
    RINCK
  • Links
    NCBI Gene ID: 90933
    neXtProt AC: NX_Q8WV44
    UniProt: Q8WV44

  • Chr Location
    5q35.3; chr5:181222499-181235808 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 3 alleles in 3 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice show impaired innate antiviral response to VSV, Listeria monocytogens, and HSV-1 infection, with decreased survival, increased microbe titers, and decreased cytokine levels. Another null allele shows male infertility with oligozoospermia and male meiosis defects.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    24
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040365 Ensembl Gene Model | MGI Sequence Detail 10950 C57BL/6J ±  kb
    transcript ENSMUST00000047145 Ensembl | MGI Sequence Detail 3432 Not Applicable  
    polypeptide ENSMUSP00000037055 Ensembl | MGI Sequence Detail 630 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2144570, MGI:2144705
    References
    more
    • Summaries
      All 37
      Developmental Gene Expression 1
      Gene Ontology 7
      Phenotypes 11
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:325726 Oura S, et al., Trim41 is required to regulate chromosome axis protein dynamics and meiosis in male mice. PLoS Genet. 2022 Jun;18(6):e1010241
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory