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Otop1 Gene Detail
Summary
  • Symbol
    Otop1
  • Name
    otopetrin 1
  • Synonyms
    A530025J20Rik, tlt
  • Feature Type
    protein coding gene
  • IDs
    MGI:2388363
    NCBI Gene: 21906
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:38434748-38461560 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 20.35 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    958 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2388363
 protein coding gene Chr5:38433316-38461560 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029510
 protein coding gene Chr5:36684798-36712955 (+)
A/J MGP_AJ_G0029476
 protein coding gene Chr5:35459380-35488289 (+)
AKR/J MGP_AKRJ_G0029426
 protein coding gene Chr5:36791467-36819860 (+)
BALB/cJ MGP_BALBcJ_G0029487
 protein coding gene Chr5:35948844-35977458 (+)
C3H/HeJ MGP_C3HHeJ_G0029210
 protein coding gene Chr5:36780891-36809266 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029941
 protein coding gene Chr5:38624784-38654642 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027179
 protein coding gene Chr5:33128520-33161327 (+)
CAST/EiJ MGP_CASTEiJ_G0028618
 protein coding gene Chr5:35950308-35978432 (+)
CBA/J MGP_CBAJ_G0029177
 protein coding gene Chr5:39535748-39570237 (+)
DBA/2J MGP_DBA2J_G0029324
 protein coding gene Chr5:35576522-35608933 (+)
FVB/NJ MGP_FVBNJ_G0029283
 protein coding gene Chr5:35063344-35091976 (+)
LP/J MGP_LPJ_G0029410
 protein coding gene Chr5:37133525-37162743 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029313
 protein coding gene Chr5:40261331-40290632 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029974
 protein coding gene Chr5:36277708-36307139 (+)
PWK/PhJ MGP_PWKPhJ_G0028342
 protein coding gene Chr5:34746843-34775430 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028176
 protein coding gene Chr5:35729395-35757554 (+)
WSB/EiJ MGP_WSBEiJ_G0028699
 protein coding gene Chr5:36358527-36387913 (+)



Homology
more
  • Human Ortholog
    OTOP1, otopetrin 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OTOP1, otopetrin 1
  • Links
    NCBI Gene ID: 133060
    neXtProt AC: NX_Q7RTM1
    UniProt: Q7RTM1

  • Chr Location
    4p16.3; chr4:4188726-4226929 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotypes from 5 alleles in 7 genetic backgrounds
    49 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutant mice display vestibular abnormalities associated with absent otoconia.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    778
  • Tissues
    47
  • cDNA Data
    7
  • Literature Summary
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      34
    • RefSeq
      2
    • UniProt
      2
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 21906 NCBI Gene Model | MGI Sequence Detail 26813 C57BL/6J ±  kb
    transcript NM_172709 RefSeq | MGI Sequence Detail 3171 ZRU/MplStud  
    polypeptide Q80VM9 UniProt | EBI | MGI Sequence Detail 600 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 7
      Primer pair 3

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGD-MRK-15136, MGI:2443555, MGI:98768
    References
    more
    • Summaries
      All 75
      Developmental Gene Expression 7
      Diseases 1
      Gene Ontology 8
      Phenotypes 49
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    11/19/2024
    MGI 6.24     		The Jackson Laboratory