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BC005537 Gene Detail
Summary
  • Symbol
    BC005537
  • Name
    cDNA sequence BC005537
  • Synonyms
    8030460C05Rik, MGC:7474
  • Feature Type
    protein coding gene
  • IDs
    MGI:2441726
    NCBI Gene: 79555
  • Alliance
    gene page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:24985640-24996882 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 10.68 cM, cytoband A3.2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    280 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2441726
 protein coding gene Chr13:24985640-25000180 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020380
 protein coding gene Chr13:22285501-22297857 (+)
A/J MGP_AJ_G0020329
 protein coding gene Chr13:21886503-21898976 (+)
AKR/J MGP_AKRJ_G0020309
 protein coding gene Chr13:22127494-22139851 (+)
BALB/cJ MGP_BALBcJ_G0020327
 protein coding gene Chr13:21863534-21875890 (+)
C3H/HeJ MGP_C3HHeJ_G0020131
 protein coding gene Chr13:22207050-22219406 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020764
 protein coding gene Chr13:23093284-23105640 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018352
 protein coding gene Chr13:20605497-20618663 (+)
CAST/EiJ MGP_CASTEiJ_G0019648
 protein coding gene Chr13:21914468-21926758 (+)
CBA/J MGP_CBAJ_G0020085
 protein coding gene Chr13:23979776-23992062 (+)
DBA/2J MGP_DBA2J_G0020211
 protein coding gene Chr13:21381205-21393984 (+)
FVB/NJ MGP_FVBNJ_G0020195
 protein coding gene Chr13:21027542-21039898 (+)
LP/J MGP_LPJ_G0020284
 protein coding gene Chr13:22598017-22610373 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020222
 protein coding gene Chr13:24229941-24242293 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020806
 protein coding gene Chr13:21973026-21985382 (+)
PWK/PhJ MGP_PWKPhJ_G0019402
 protein coding gene Chr13:21403904-21416403 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019218
 protein coding gene Chr13:20799046-20811520 (+)
WSB/EiJ MGP_WSBEiJ_G0019708
 protein coding gene Chr13:22138057-22150381 (+)



Homology
more
  • Human Ortholog
    C6orf62, chromosome 6 open reading frame 62
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C6orf62, chromosome 6 open reading frame 62
  • Synonyms
    dJ30M3.2, Nbla00237, XTP12
  • Links
    NCBI Gene ID: 81688
    neXtProt AC: NX_Q9GZU0
    UniProt: Q9GZU0

  • Chr Location
    6p22.3; chr6:24704861-24720836 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    752
  • Tissues
    32
  • cDNA Data
    16
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 79555 NCBI Gene Model | MGI Sequence Detail 11243 C57BL/6J ±  kb
transcript NM_024473 RefSeq | MGI Sequence Detail 2551 C57BL/6  
polypeptide Q99LU8 UniProt | EBI | MGI Sequence Detail 229 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    Genomic 1
    cDNA 16

    Microarray probesets 5
Other
Accession IDs
less
MGI:2135251, MGI:2145495
References
more
  • Summaries
    All 43
    Developmental Gene Expression 3
    Phenotypes 16
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory