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Snhg11 Gene Detail
Summary
  • Symbol
    Snhg11
  • Name
    small nucleolar RNA host gene 11
  • Synonyms
    A930034L06Rik, E130013N09Rik
Location &
Maps
more
  • Sequence Map
    Chr2:158217558-158228071 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 78.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    442 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2441845
 protein coding gene Chr2:158217558-158228394 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026793
 protein coding gene Chr2:163449364-163459861 (+)
A/J MGP_AJ_G0026759
 protein coding gene Chr2:156890613-156901125 (+)
AKR/J MGP_AKRJ_G0026730
 protein coding gene Chr2:161514948-161525437 (+)
BALB/cJ MGP_BALBcJ_G0026768
 protein coding gene Chr2:157195556-157206404 (+)
C3H/HeJ MGP_C3HHeJ_G0026510
 protein coding gene Chr2:161844647-161855158 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027217
 protein coding gene Chr2:168324554-168335061 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024587
 protein coding gene Chr2:150332560-150343255 (+)
CAST/EiJ MGP_CASTEiJ_G0025972
 protein coding gene Chr2:162209137-162219502 (+)
CBA/J MGP_CBAJ_G0026487
 protein coding gene Chr2:174351856-174362364 (+)
DBA/2J MGP_DBA2J_G0026625
 protein coding gene Chr2:156065547-156076204 (+)
FVB/NJ MGP_FVBNJ_G0026592
 protein coding gene Chr2:154475324-154485841 (+)
LP/J MGP_LPJ_G0026728
 protein coding gene Chr2:163539123-163549614 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026613
 protein coding gene Chr2:178147229-178159166 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027273
 protein coding gene Chr2:161345115-161356770 (+)
PWK/PhJ MGP_PWKPhJ_G0025706
 protein coding gene Chr2:155600507-155611098 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025509
 protein coding gene Chr2:160262423-160276728 (+)
WSB/EiJ MGP_WSBEiJ_G0026042
 protein coding gene Chr2:162238873-162249282 (+)



Homology
more
  • Human Ortholog
    SNHG11, small nucleolar RNA host gene 11
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG11, small nucleolar RNA host gene 11
  • Synonyms
    C20orf198, LINC00101, NCRNA00101
  • Links
    NCBI Gene ID: 128439

  • Chr Location
    20q11.23; chr20:38446343-38450940 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1179
  • Tissues
    70
  • cDNA Data
    20
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000044349 Ensembl Gene Model | MGI Sequence Detail 10514 C57BL/6J ±  kb
transcript ENSMUST00000109488 Ensembl | MGI Sequence Detail 5864 Not Applicable  
polypeptide ENSMUSP00000105114 Ensembl | MGI Sequence Detail 87 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 22
    cDNA 22

    Microarray probesets 6
Other
Accession IDs
less
MGI:2139102, MGI:2139119, MGI:2139341
References
more
  • Summaries
    All 30
    Developmental Gene Expression 5
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:351599 Sierra C, et al., The lncRNA Snhg11, a new candidate contributing to neurogenesis, plasticity, and memory deficits in Down syndrome. Mol Psychiatry. 2024 Feb 27;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory