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Cdh7 Gene Detail
Summary
  • Symbol
    Cdh7
  • Name
    cadherin 7, type 2
  • Synonyms
    9330156F07Rik, CDH7L1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442792
    NCBI Gene: 241201
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:109910161-110067887 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 50.73 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5283 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442792
 protein coding gene Chr1:109909967-110073002 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016385
 protein coding gene Chr1:112253381-112433704 (+)
A/J MGP_AJ_G0016365
 protein coding gene Chr1:108285908-108446916 (+)
AKR/J MGP_AKRJ_G0016329
 protein coding gene Chr1:111361213-111525204 (+)
BALB/cJ MGP_BALBcJ_G0016325
 protein coding gene Chr1:108438799-108601929 (+)
C3H/HeJ MGP_C3HHeJ_G0016152
 protein coding gene Chr1:111757677-111922517 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016784
 protein coding gene Chr1:116558800-116750280 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014502
 protein coding gene Chr1:102287752-102443957 (+)
CAST/EiJ MGP_CASTEiJ_G0015735
 protein coding gene Chr1:110841108-111007645 (+)
CBA/J MGP_CBAJ_G0016124
 protein coding gene Chr1:120551365-120726188 (+)
DBA/2J MGP_DBA2J_G0016231
 protein coding gene Chr1:107413196-107570673 (+)
FVB/NJ MGP_FVBNJ_G0016230
 protein coding gene Chr1:106279844-106439379 (+)
LP/J MGP_LPJ_G0016304
 protein coding gene Chr1:113544780-113720385 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016257
 protein coding gene Chr1:125590584-125812626 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016822
 protein coding gene Chr1:111331685-111501494 (+)
PWK/PhJ MGP_PWKPhJ_G0015520
 protein coding gene Chr1:106419393-106584824 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015308
 protein coding gene Chr1:109991830-110168790 (+)
WSB/EiJ MGP_WSBEiJ_G0015797
 protein coding gene Chr1:111176727-111345845 (+)



Homology
more
  • Human Ortholog
    CDH7, cadherin 7
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDH7, cadherin 7
  • Synonyms
    CDH7L1
  • Links
    NCBI Gene ID: 1005
    neXtProt AC: NX_Q9ULB5
    UniProt: Q9ULB5

  • Chr Location
    18q22.1; chr18:65750252-65890337 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    825
  • Tissues
    66
  • cDNA Data
    12
  • Literature Summary
    16
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026312 Ensembl Gene Model | MGI Sequence Detail 157727 C57BL/6J ±  kb
    transcript ENSMUST00000172005 Ensembl | MGI Sequence Detail 3353 Not Applicable  
    polypeptide ENSMUSP00000129715 Ensembl | MGI Sequence Detail 785 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 12
      Primer pair 3
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 46
      Developmental Gene Expression 16
      Gene Ontology 3
      Phenotypes 9
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory