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Tet2 Gene Detail
Summary
  • Symbol
    Tet2
  • Name
    tet methylcytosine dioxygenase 2
  • Synonyms
    Ayu17-449, E130014J05Rik, mKIAA1546
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443298
    NCBI Gene: 214133
  • Alliance
    gene page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:133169438-133250882 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 61.84 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1962 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443298
 protein coding gene Chr3:133169438-133250900 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027899
 protein coding gene Chr3:136271097-136357816 (-)
A/J MGP_AJ_G0027857
 protein coding gene Chr3:131459334-131541950 (-)
AKR/J MGP_AKRJ_G0027822
 protein coding gene Chr3:134898913-134984151 (-)
BALB/cJ MGP_BALBcJ_G0027870
 protein coding gene Chr3:131305439-131387527 (-)
C3H/HeJ MGP_C3HHeJ_G0027599
 protein coding gene Chr3:135270894-135353305 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028313
 protein coding gene Chr3:141016933-141094989 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025651
 protein coding gene Chr3:126867018-126949289 (-)
CAST/EiJ MGP_CASTEiJ_G0027055
 protein coding gene Chr3:135038542-135123216 (-)
CBA/J MGP_CBAJ_G0027575
 protein coding gene Chr3:145810140-145919311 (-)
DBA/2J MGP_DBA2J_G0027715
 protein coding gene Chr3:130617308-130697856 (-)
FVB/NJ MGP_FVBNJ_G0027682
 protein coding gene Chr3:128209146-128288476 (-)
LP/J MGP_LPJ_G0027825
 protein coding gene Chr3:137740776-137828063 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027713
 protein coding gene Chr3:153793857-153889199 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028371
 protein coding gene Chr3:134530937-134613645 (-)
PWK/PhJ MGP_PWKPhJ_G0026779
 protein coding gene Chr3:130382478-130464233 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026604
 protein coding gene Chr3:132620561-132708409 (-)
WSB/EiJ MGP_WSBEiJ_G0027134
 protein coding gene Chr3:135306381-135392804 (-)



Homology
more
  • Human Ortholog
    TET2, tet methylcytosine dioxygenase 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TET2, tet methylcytosine dioxygenase 2
  • Synonyms
    IMD75, KIAA1546, MDS
  • Links
    NCBI Gene ID: 54790
    neXtProt AC: NX_Q6N021
    UniProt: Q6N021

  • Chr Location
    4q24; chr4:105145875-105279816 (+)  GRCh38
Human Diseases
more
  • Diseases
    10 with human TET2 associations

Human Disease Mouse Models
      
IDs
IDs
IDs
IDs
IDs
IDs
 View 1 model
IDs
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    48 phenotypes from 6 alleles in 7 genetic backgrounds
    22 phenotypes from multigenic genotypes
    195 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trapped allele die shortly after birth and exhibit a loss of acidic granules in the proximal convoluted tubules of the kidneys. Mice homozygous for a conditional allele activated in hematopoeitic compartment exhibit self-renewal and myeloid transforamtion.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    39
  • GO References
    18
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    915
  • Tissues
    156
  • cDNA Data
    37
  • Literature Summary
    25
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 214133 NCBI Gene Model | MGI Sequence Detail 81445 C57BL/6J ±  kb
    transcript NM_001346736 RefSeq | MGI Sequence Detail 9205 C57BL/6  
    polypeptide Q4JK59 UniProt | EBI | MGI Sequence Detail 1912 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 47
      cDNA 38
      Primer pair 8
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 283
      Developmental Gene Expression 25
      Diseases 2
      Gene Ontology 18
      Phenotypes 195
    • Earliest
      J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
    • Latest
      J:354995 Gioulbasani M, et al., TET proteins regulate Drosha expression and impact microRNAs in iNKT cells. Front Immunol. 2024;15:1440044
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory