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Pgap3 Gene Detail
Summary
  • Symbol
    Pgap3
  • Name
    post-GPI attachment to proteins 3
  • Synonyms
    CAB2, D430035D22Rik, Perld1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444461
    NCBI Gene: 320655
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:98279503-98291316 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 61.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    359 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444461
 protein coding gene Chr11:98279498-98292022 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019058
 protein coding gene Chr11:100929444-100942581 (-)
A/J MGP_AJ_G0019026
 protein coding gene Chr11:96735402-96747245 (-)
AKR/J MGP_AKRJ_G0018996
 protein coding gene Chr11:99730032-99744485 (-)
BALB/cJ MGP_BALBcJ_G0018999
 protein coding gene Chr11:97227515-97240484 (-)
C3H/HeJ MGP_C3HHeJ_G0018813
 protein coding gene Chr11:99863936-99877154 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019452
 protein coding gene Chr11:104010057-104024714 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017083
 protein coding gene Chr11:94175037-94186462 (-)
CAST/EiJ MGP_CASTEiJ_G0018367
 protein coding gene Chr11:100741224-100754594 (-)
CBA/J MGP_CBAJ_G0018784
 protein coding gene Chr11:108318174-108341070 (-)
DBA/2J MGP_DBA2J_G0018892
 protein coding gene Chr11:96277979-96289758 (-)
FVB/NJ MGP_FVBNJ_G0018881
 protein coding gene Chr11:95785860-95798208 (-)
LP/J MGP_LPJ_G0018962
 protein coding gene Chr11:101407571-101420412 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018908
 protein coding gene Chr11:108121068-108135195 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019492
 protein coding gene Chr11:100058093-100072422 (-)
PWK/PhJ MGP_PWKPhJ_G0018139
 protein coding gene Chr11:97284338-97296206 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017929
 protein coding gene Chr11:99764705-99776502 (-)
WSB/EiJ MGP_WSBEiJ_G0018417
 protein coding gene Chr11:99970837-99987413 (-)



Homology
more
  • Human Ortholog
    PGAP3, post-GPI attachment to proteins phospholipase 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PGAP3, post-GPI attachment to proteins phospholipase 3
  • Synonyms
    AGLA546, CAB2, hCOS16, PERLD1, PP1498
  • Links
    NCBI Gene ID: 93210
    neXtProt AC: NX_Q96FM1
    UniProt: Q96FM1

  • Chr Location
    17q12; chr17:39671122-39696797 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human PGAP3 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotypes from 2 alleles in 4 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted allele exhibit abnormal head and tail morphology, growth retardation, limb glasping, altered T cell proliferation response and increased susceptibility to EAE.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    13
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000038208 Ensembl Gene Model | MGI Sequence Detail 11814 C57BL/6J ±  kb
    transcript ENSMUST00000090827 Ensembl | MGI Sequence Detail 2419 Not Applicable  
    polypeptide ENSMUSP00000088337 Ensembl | MGI Sequence Detail 320 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 3
    References
    more
    • Summaries
      All 37
      Gene Ontology 5
      Phenotypes 12
    • Earliest
      J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
    • Latest
      J:203443 Wang Y, et al., Significance of glycosylphosphatidylinositol-anchored protein enrichment in lipid rafts for the control of autoimmunity. J Biol Chem. 2013 Aug 30;288(35):25490-9
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory