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Xkr6 Gene Detail
Summary
  • Symbol
    Xkr6
  • Name
    X-linked Kx blood group related 6
  • Synonyms
    2700008G24Rik, MGC:37452
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447765
    NCBI Gene: 219149
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:63843952-64058258 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 33.34 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4880 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447765
 protein coding gene Chr14:63841608-64084451 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021464
 protein coding gene Chr14:58147383-58367584 (+)
A/J MGP_AJ_G0021423
 protein coding gene Chr14:56819032-57031358 (+)
AKR/J MGP_AKRJ_G0021399
 protein coding gene Chr14:58839150-59054970 (+)
BALB/cJ MGP_BALBcJ_G0021429
 protein coding gene Chr14:56775625-56989771 (+)
C3H/HeJ MGP_C3HHeJ_G0021206
 protein coding gene Chr14:58460696-58676526 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021868
 protein coding gene Chr14:60893950-61112717 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019408
 protein coding gene Chr14:54759110-54967537 (+)
CAST/EiJ MGP_CASTEiJ_G0020723
 protein coding gene Chr14:54918035-55128252 (+)
CBA/J MGP_CBAJ_G0021173
 protein coding gene Chr14:62716413-62948893 (+)
DBA/2J MGP_DBA2J_G0021296
 protein coding gene Chr14:56492998-56706013 (+)
FVB/NJ MGP_FVBNJ_G0021275
 protein coding gene Chr14:55878351-56090273 (+)
LP/J MGP_LPJ_G0021371
 protein coding gene Chr14:59186604-59406312 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021304
 protein coding gene Chr14:61934712-62152967 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021891
 protein coding gene Chr14:57993113-58211787 (+)
PWK/PhJ MGP_PWKPhJ_G0020467
 protein coding gene Chr14:53174493-53383674 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020300
 protein coding gene Chr14:53957717-54175201 (+)
WSB/EiJ MGP_WSBEiJ_G0020776
 protein coding gene Chr14:58311784-58529040 (+)



Homology
more
  • Human Ortholog
    XKR6, XK related 6
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    XKR6, XK related 6
  • Synonyms
    C8orf21, C8orf5, C8orf7, XRG6
  • Links
    NCBI Gene ID: 286046
    neXtProt AC: NX_Q5GH73
    UniProt: Q5GH73

  • Chr Location
    8p23.1; chr8:10896045-11201833 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    807
  • Tissues
    14
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035067 Ensembl Gene Model | MGI Sequence Detail 214307 C57BL/6J ±  kb
transcript ENSMUST00000119973 Ensembl | MGI Sequence Detail 2963 Not Applicable  
polypeptide ENSMUSP00000113708 Ensembl | MGI Sequence Detail 638 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919795
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:306586 Suzuki J, et al., Exposure of phosphatidylserine by Xk-related protein family members during apoptosis. J Biol Chem. 2014 Oct 31;289(44):30257-30267
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory