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H4c17 Gene Detail
Summary
  • Symbol
    H4c17
  • Name
    H4 clustered histone 17
  • Synonyms
    Gm11275, Hist1h4m
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448441
    NCBI Gene: 100041230
  • Member of
    Hist1 cluster
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:21995916-21996317 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 7.99 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448441
 protein coding gene Chr13:21995916-21996320 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020303
 protein coding gene Chr13:19129040-19131254 (-)
A/J MGP_AJ_G0020260
 protein coding gene Chr13:18696450-18696851 (-)
AKR/J MGP_AKRJ_G0020232
 protein coding gene Chr13:18986088-18986489 (+)
BALB/cJ MGP_BALBcJ_G0020247
 protein coding gene Chr13:18746243-18746644 (-)
C3H/HeJ MGP_C3HHeJ_G0020057
 protein coding gene Chr13:19112563-19112964 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020686
 protein coding gene Chr13:19803198-19803590 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018299
 protein coding gene Chr13:17206896-17207290 (-)
CAST/EiJ MGP_CASTEiJ_G0019586
 protein coding gene Chr13:19135046-19135444 (-)
CBA/J MGP_CBAJ_G0020011
 protein coding gene Chr13:20468566-20471338 (-)
DBA/2J MGP_DBA2J_G0020134
 protein coding gene Chr13:18340334-18340735 (-)
FVB/NJ MGP_FVBNJ_G0020121
 protein coding gene Chr13:17980176-17980577 (-)
LP/J MGP_LPJ_G0020204
 protein coding gene Chr13:19353278-19353679 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020157
 protein coding gene Chr13:21105931-21106310 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020720
 protein coding gene Chr13:18804788-18805189 (+)
PWK/PhJ MGP_PWKPhJ_G0019342
 protein coding gene Chr13:18575617-18576233 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019154
 protein coding gene Chr13:18039664-18040005 (-)
WSB/EiJ MGP_WSBEiJ_G0019646
 protein coding gene Chr13:19164898-19165296 (-)



Homology
more
  • Human Ortholog
    H4C4, H4 clustered histone 4
  • Vertebrate Orthologs
    16
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H4C4, H4 clustered histone 4
  • Synonyms
    dJ221C16.9, H4-16, H4/b, H4C1, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16, H4C2, H4C3, H4C5, H4C6, H4C8, H4C9, H4FB, HIST1H4D
  • Links
    NCBI Gene ID: 8360
    neXtProt AC: NX_P62805
    UniProt: P62805

  • Chr Location
    6p22.2; chr6:26188710-26189112 (-)  GRCh38
  • Human Ortholog
    H4C5, H4 clustered histone 5
  • Synonyms
    H4-16, H4C1, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16, H4C2, H4C3, H4C4, H4C6, H4C8, H4C9, H4FJ, H4/j, HIST1H4E, TEBIVANED3, TEVANED3
  • Links
    NCBI Gene ID: 8367
    neXtProt AC: NX_P62805
    UniProt: P62805

  • Chr Location
    6p22.2; chr6:26204610-26205021 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H4c17
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    737
  • Tissues
    23
  • cDNA Data
    2
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000069306 Ensembl Gene Model | MGI Sequence Detail 402 C57BL/6J ±  kb
transcript ENSMUST00000104941 Ensembl | MGI Sequence Detail 402 Not Applicable  
polypeptide ENSMUSP00000100546 Ensembl | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    Genomic 1
    cDNA 2
    Primer pair 1
Other
Accession IDs
less
MGI:3711960, MGI:6384989
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:175731 Liu LJ, et al., Functional coupling of transcription factor HiNF-P and histone H4 gene expression during pre- and post-natal mouse development. Gene. 2011 Sep 1;483(1-2):1-10
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory