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Galnt9 Gene Detail
Summary
  • Symbol
    Galnt9
  • Name
    polypeptide N-acetylgalactosaminyltransferase 9
  • Synonyms
    GalNAc-T9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2677965
    NCBI Gene: 231605
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:110692221-110769246 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 53.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2206 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2677965
 protein coding gene Chr5:110692217-110769246 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0029854
 protein coding gene Chr5:108632324-108709370 (+)
AKR/J MGP_AKRJ_G0029792
 protein coding gene Chr5:112083779-112160615 (+)
BALB/cJ MGP_BALBcJ_G0029865
 protein coding gene Chr5:110002561-110079612 (+)
C3H/HeJ MGP_C3HHeJ_G0029585
 protein coding gene Chr5:112517314-112594340 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030318
 protein coding gene Chr5:117464969-117541885 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027547
 protein coding gene Chr5:103457340-103540807 (+)
CAST/EiJ MGP_CASTEiJ_G0028993
 protein coding gene Chr5:111389424-111471253 (+)
CBA/J MGP_CBAJ_G0029552
 protein coding gene Chr5:121884551-121967348 (+)
DBA/2J MGP_DBA2J_G0029702
 protein coding gene Chr5:108703047-108780853 (+)
FVB/NJ MGP_FVBNJ_G0029659
 protein coding gene Chr5:107373192-107451032 (+)
LP/J MGP_LPJ_G0029790
 protein coding gene Chr5:113572922-113651902 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029690
 protein coding gene Chr5:126533214-126610269 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030359
 protein coding gene Chr5:111522861-111600197 (+)
PWK/PhJ MGP_PWKPhJ_G0028707
 protein coding gene Chr5:107286821-107377938 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028545
 protein coding gene Chr5:108987797-109067380 (+)
WSB/EiJ MGP_WSBEiJ_G0029069
 protein coding gene Chr5:111997812-112076039 (+)



Homology
more
  • Human Ortholog
    GALNT9, polypeptide N-acetylgalactosaminyltransferase 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNT9, polypeptide N-acetylgalactosaminyltransferase 9
  • Synonyms
    GALNAC-T9, GALNACT9
  • Links
    NCBI Gene ID: 50614
    neXtProt AC: NX_Q9HCQ5
    UniProt: Q9HCQ5

  • Chr Location
    12q24.33; chr12:132196372-132329589 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    944
  • Tissues
    119
  • cDNA Data
    10
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000033316 Ensembl Gene Model | MGI Sequence Detail 77026 C57BL/6J ±  kb
    transcript ENSMUST00000040001 Ensembl | MGI Sequence Detail 2883 Not Applicable  
    polypeptide ENSMUSP00000038633 Ensembl | MGI Sequence Detail 604 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • EC
      2.4.1.-
    • InterPro Domains
      IPR001173 Glycosyltransferase 2-like
      IPR045885 N-acetylgalactosaminyltransferase
      IPR029044 Nucleotide-diphospho-sugar transferases
      IPR000772 Ricin B, lectin domain
      IPR035992 Ricin B-like lectins
    • GlyGen
      G3X942 2 sites, 2 N-linked glycans (2 sites)
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 10
      Primer pair 2
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 5
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory