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Lcn11 Gene Detail
Summary
  • Symbol
    Lcn11
  • Name
    lipocalin 11
  • Feature Type
    protein coding gene
  • IDs
    MGI:2684955
    NCBI Gene: 227630
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25667029-25670291 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 18.02 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    227 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684955
 protein coding gene Chr2:25667029-25670291 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025470
 protein coding gene Chr2:23701880-23705142 (+)
A/J MGP_AJ_G0025447
 protein coding gene Chr2:22792126-22795403 (+)
AKR/J MGP_AKRJ_G0025417
 protein coding gene Chr2:23537846-23541123 (+)
BALB/cJ MGP_BALBcJ_G0025443
 protein coding gene Chr2:22895224-22898486 (+)
C3H/HeJ MGP_C3HHeJ_G0025204
 protein coding gene Chr2:23464682-23467944 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025887
 protein coding gene Chr2:24458511-24461773 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023298
 protein coding gene Chr2:21677284-21680640 (+)
CAST/EiJ MGP_CASTEiJ_G0024667
 protein coding gene Chr2:23350254-23353534 (+)
CBA/J MGP_CBAJ_G0025182
 protein coding gene Chr2:25299249-25302511 (+)
DBA/2J MGP_DBA2J_G0025315
 protein coding gene Chr2:22616511-22619788 (+)
FVB/NJ MGP_FVBNJ_G0025277
 protein coding gene Chr2:22360517-22363779 (+)
LP/J MGP_LPJ_G0025401
 protein coding gene Chr2:23634169-23637431 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025308
 protein coding gene Chr2:25471848-25475110 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025946
 protein coding gene Chr2:23493500-23496799 (+)
PWK/PhJ MGP_PWKPhJ_G0024415
 protein coding gene Chr2:22411836-22415241 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024215
 protein coding gene Chr2:23611917-23615149 (+)
WSB/EiJ MGP_WSBEiJ_G0024736
 protein coding gene Chr2:23559282-23562557 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 227630 NCBI Gene Model | MGI Sequence Detail 3263 C57BL/6J ±  kb
transcript NM_001100455 RefSeq | MGI Sequence Detail 652 C57BL/6  
polypeptide NP_001093925 RefSeq | MGI Sequence Detail 178 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:92984 Suzuki K, et al., Molecular evolution of epididymal lipocalin genes localized on mouse chromosome 2. Gene. 2004 Sep 15;339:49-59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory