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Smbd1 Gene Detail
Summary
  • Symbol
    Smbd1
  • Name
    somatomedin B domain containing 1
  • Synonyms
    Gm933, LOC381043, LOC385630
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685779
    NCBI Gene: 381043
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:32625258-32630816 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    318 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685779
 protein coding gene Chr16:32625130-32630847 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022746
 protein coding gene Chr16:30920812-30926123 (-)
A/J MGP_AJ_G0022711
 protein coding gene Chr16:29441397-29448133 (-)
AKR/J MGP_AKRJ_G0022684
 protein coding gene Chr16:30508338-30514059 (-)
BALB/cJ MGP_BALBcJ_G0022713
 protein coding gene Chr16:29584541-29590336 (-)
C3H/HeJ MGP_C3HHeJ_G0022478
 protein coding gene Chr16:30626949-30634036 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023162
 protein coding gene Chr16:31581981-31590518 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020680
 protein coding gene Chr16:29814788-29820515 (-)
CAST/EiJ MGP_CASTEiJ_G0022006
 protein coding gene Chr16:30775705-30781234 (-)
CBA/J MGP_CBAJ_G0022448
 protein coding gene Chr16:32848876-32859782 (-)
DBA/2J MGP_DBA2J_G0022581
 protein coding gene Chr16:29288143-29294048 (-)
FVB/NJ MGP_FVBNJ_G0022556
 protein coding gene Chr16:29275379-29280700 (-)
LP/J MGP_LPJ_G0022648
 protein coding gene Chr16:30687385-30693687 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022575
 protein coding gene Chr16:32257320-32267886 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023174
 protein coding gene Chr16:30485489-30492672 (-)
PWK/PhJ MGP_PWKPhJ_G0021745
 protein coding gene Chr16:29624630-29630444 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021576
 protein coding gene Chr16:30287773-30294940 (-)
WSB/EiJ MGP_WSBEiJ_G0022050
 protein coding gene Chr16:30449445-30458911 (-)



Homology
more
  • Human Ortholog
    SMBD1P, somatomedin B domain containing 1, pseudogene
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMBD1P, somatomedin B domain containing 1, pseudogene
  • Links
    NCBI Gene ID: 111674481

  • Chr Location
    3q29; chr3:195701608-195711705 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 381043 NCBI Gene Model | MGI Sequence Detail 5559 C57BL/6J ±  kb
transcript NM_001256309 RefSeq | MGI Sequence Detail 520 ZRU/MplStud  
polypeptide NP_001243238 RefSeq | MGI Sequence Detail 141 ZRU/MplStud  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001212 Somatomedin B domain
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGI:2686589, MGI:6107684
References
more
  • Summaries
    All 12
    Phenotypes 2
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory