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Ccdc27 Gene Detail
Summary
  • Symbol
    Ccdc27
  • Name
    coiled-coil domain containing 27
  • Synonyms
    LOC381580
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685881
    NCBI Gene: 381580
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:154111096-154127134 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 83.79 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    528 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685881
 protein coding gene Chr4:154111096-154127202 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029190
 protein coding gene Chr4:158260930-158286419 (-)
A/J MGP_AJ_G0029155
 protein coding gene Chr4:151629386-151645032 (-)
AKR/J MGP_AKRJ_G0029103
 protein coding gene Chr4:155761223-155776894 (-)
BALB/cJ MGP_BALBcJ_G0029171
 protein coding gene Chr4:152096897-152112583 (-)
C3H/HeJ MGP_C3HHeJ_G0028892
 protein coding gene Chr4:156297480-156314113 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029620
 protein coding gene Chr4:163926636-163944003 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026866
 protein coding gene Chr4:143931186-143946686 (-)
CAST/EiJ MGP_CASTEiJ_G0028305
 protein coding gene Chr4:153695586-153711633 (-)
CBA/J MGP_CBAJ_G0028854
 protein coding gene Chr4:168850667-168866346 (-)
DBA/2J MGP_DBA2J_G0029003
 protein coding gene Chr4:151655460-151671586 (-)
FVB/NJ MGP_FVBNJ_G0028967
 protein coding gene Chr4:150855403-150872330 (-)
LP/J MGP_LPJ_G0029093
 protein coding gene Chr4:158176566-158192382 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028994
 protein coding gene Chr4:171770427-171789388 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029652
 protein coding gene Chr4:156331126-156346864 (-)
PWK/PhJ MGP_PWKPhJ_G0028025
 protein coding gene Chr4:147731639-147748579 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027859
 protein coding gene Chr4:150617795-150634311 (-)
WSB/EiJ MGP_WSBEiJ_G0028385
 protein coding gene Chr4:156494747-156512317 (-)



Homology
more
  • Human Ortholog
    CCDC27, coiled-coil domain containing 27
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC27, coiled-coil domain containing 27
  • Links
    NCBI Gene ID: 148870
    neXtProt AC: NX_Q2M243
    UniProt: Q2M243

  • Chr Location
    1p36.32; chr1:3746460-3771645 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039492 Ensembl Gene Model | MGI Sequence Detail 16039 C57BL/6J ±  kb
transcript ENSMUST00000047207 Ensembl | MGI Sequence Detail 2089 Not Applicable  
polypeptide ENSMUSP00000039642 Ensembl | MGI Sequence Detail 639 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031038 coiled-coil domain-containing protein 27
    (term hierarchy)
  • InterPro Domains
    IPR052642 Coiled-coil and Forkhead-associated domain-containing protein
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Phenotypes 7
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory