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Fam47e Gene Detail
Summary
  • Symbol
    Fam47e
  • Name
    family with sequence similarity 47, member E
  • Synonyms
    Gm1381, LOC384198
  • Feature Type
    protein coding gene
  • IDs
    MGI:2686227
    NCBI Gene: 384198
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:92702928-92739138 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 47.09 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1486 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2686227
 protein coding gene Chr5:92702823-92739144 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029753
 protein coding gene Chr5:93744991-93781570 (+)
A/J MGP_AJ_G0029719
 protein coding gene Chr5:90017176-90053343 (+)
AKR/J MGP_AKRJ_G0029665
 protein coding gene Chr5:92978580-93015142 (+)
BALB/cJ MGP_BALBcJ_G0029729
 protein coding gene Chr5:90894889-90931085 (+)
C3H/HeJ MGP_C3HHeJ_G0029452
 protein coding gene Chr5:93365743-93403080 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030183
 protein coding gene Chr5:97458870-97496765 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027419
 protein coding gene Chr5:85655535-85687661 (+)
CAST/EiJ MGP_CASTEiJ_G0028862
 protein coding gene Chr5:92739845-92781549 (+)
CBA/J MGP_CBAJ_G0029422
 protein coding gene Chr5:100855751-100895570 (+)
DBA/2J MGP_DBA2J_G0029566
 protein coding gene Chr5:90061534-90093979 (+)
FVB/NJ MGP_FVBNJ_G0029525
 protein coding gene Chr5:88915375-88954333 (+)
LP/J MGP_LPJ_G0029654
 protein coding gene Chr5:94104005-94143589 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029554
 protein coding gene Chr5:105754569-105792211 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030217
 protein coding gene Chr5:92494574-92531997 (+)
PWK/PhJ MGP_PWKPhJ_G0028581
 protein coding gene Chr5:89123013-89160226 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028416
 protein coding gene Chr5:91842679-91878340 (+)
WSB/EiJ MGP_WSBEiJ_G0028941
 protein coding gene Chr5:92955838-92995388 (+)



Homology
more
  • Human Ortholog
    FAM47E, family with sequence similarity 47 member E
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM47E, family with sequence similarity 47 member E
  • Links
    NCBI Gene ID: 100129583
    neXtProt AC: NX_Q6ZV65
    UniProt: Q6ZV65

  • Chr Location
    4q21.1; chr4:76214040-76283783 (+)  GRCh38
  • Human Ortholog
    FAM47E-STBD1, FAM47E-STBD1 readthrough
  • Synonyms
    FAM47E
  • Links
    NCBI Gene ID: 100631383
    neXtProt AC: NX_Q6ZV65

  • Chr Location
    4q21.1; chr4:76251721-76311130 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    3
  • Genomic Mutations
    3 involving Fam47e
  • Incidental Mutations
    Mutagenetix , APF
  • Find Mice (IMSR)
    27 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000057068 Ensembl Gene Model | MGI Sequence Detail 36211 C57BL/6J ±  kb
transcript ENSMUST00000146417 Ensembl | MGI Sequence Detail 1357 Not Applicable  
polypeptide ENSMUSP00000115229 Ensembl | MGI Sequence Detail 402 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
  • InterPro Domains
    IPR032743 FAM47 family
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
References
more
  • Summaries
    All 27
    Gene Ontology 2
    Phenotypes 12
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory