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Igkv5-39 Gene Detail
Summary
  • Symbol
    Igkv5-39
  • Name
    immunoglobulin kappa variable 5-39
  • Synonyms
    LOC384415
  • Feature Type
    gene segment
  • IDs
    MGI:2686255
    NCBI Gene: 620017
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:69877408-69877961 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.67 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    123 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2686255
 gene segment Chr6:69877408-69877961 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000158
 gene segment Chr6:70248475-70249028 (-)
A/J MGP_AJ_G0000140
 gene segment Chr6:67453440-67453993 (-)
AKR/J MGP_AKRJ_G0000139
 gene segment Chr6:69418428-69418981 (-)
BALB/cJ MGP_BALBcJ_G0000133
 gene segment Chr6:67607310-67607863 (-)
C3H/HeJ MGP_C3HHeJ_G0000116
 gene segment Chr6:114804835-114805388 (+)
C57BL/6NJ MGP_C57BL6NJ_G0000197
 gene segment Chr6:72013875-72014428 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000074
 gene segment Chr6:67039414-67039966 (-)
CAST/EiJ MGP_CASTEiJ_G0000145
 gene segment Chr6:69369571-69370124 (-)
CBA/J MGP_CBAJ_G0000139
 gene segment Chr6:74876533-74877086 (-)
DBA/2J MGP_DBA2J_G0000133
 gene segment Chr6:66899558-66900111 (-)
FVB/NJ MGP_FVBNJ_G0000131
 gene segment Chr6:66332009-66332562 (-)
LP/J MGP_LPJ_G0000162
 gene segment Chr6:70102617-70103170 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000143
 gene segment Chr6:78542955-78543508 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000179
 gene segment Chr6:69356875-69357428 (-)
PWK/PhJ MGP_PWKPhJ_G0000121
 gene segment Chr6:65956875-65957428 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000098
 gene segment Chr6:68222496-68223049 (-)
WSB/EiJ MGP_WSBEiJ_G0000138
 gene segment Chr6:69642992-69643545 (-)



Homology
more
  • Human Ortholog
    IGKV6-21, immunoglobulin kappa variable 6-21 (non-functional)
  • Vertebrate Orthologs
    7
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV6-21, immunoglobulin kappa variable 6-21 (non-functional)
  • Synonyms
    A26, IGKV621
  • Links
    NCBI Gene ID: 28906
    UniProt: A0A0C4DH24

  • Chr Location
    2p11.2; chr2:89159751-89160366 (-)  GRCh38
  • Human Ortholog
    IGKV6D-21, immunoglobulin kappa variable 6D-21 (non-functional)
  • Synonyms
    A10, IGKV6D21
  • Links
    NCBI Gene ID: 28870
    UniProt: A0A0A0MT36

  • Chr Location
    2p11.2; chr2:90021567-90022185 (+)  GRCh38
  • Human Ortholog
    IGKV6D-41, immunoglobulin kappa variable 6D-41 (non-functional)
  • Synonyms
    A14
  • Links
    NCBI Gene ID: 28869
    UniProt: A0A0C4DH26

  • Chr Location
    2p11.2; chr2:90069662-90070240 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    3
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 620017 NCBI Gene Model | MGI Sequence Detail 554 C57BL/6J ±  kb
transcript U48716 GenBank | ENA | DDBJ | MGI Sequence Detail 789 Not Specified  
polypeptide Q65ZI1 UniProt | EBI | MGI Sequence Detail 262 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 14
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory