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Syde2 Gene Detail
Summary
  • Symbol
    Syde2
  • Name
    synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
  • Synonyms
    C430017H16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3036264
    NCBI Gene: 214804
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:145693625-145727475 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 71.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1212 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3036264
 protein coding gene Chr3:145693160-145727475 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027965
 protein coding gene Chr3:149444412-149493449 (+)
A/J MGP_AJ_G0027924
 protein coding gene Chr3:144124309-144161009 (+)
AKR/J MGP_AKRJ_G0027890
 protein coding gene Chr3:147964382-148001193 (+)
BALB/cJ MGP_BALBcJ_G0027936
 protein coding gene Chr3:143940010-143975950 (+)
C3H/HeJ MGP_C3HHeJ_G0027666
 protein coding gene Chr3:148326242-148362569 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028379
 protein coding gene Chr3:154501400-154534921 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025717
 protein coding gene Chr3:139198366-139231904 (+)
CAST/EiJ MGP_CASTEiJ_G0027119
 protein coding gene Chr3:148296168-148303459 (+)
CBA/J MGP_CBAJ_G0027641
 protein coding gene Chr3:159947660-159985511 (+)
DBA/2J MGP_DBA2J_G0027781
 protein coding gene Chr3:143262913-143301517 (+)
FVB/NJ MGP_FVBNJ_G0027748
 protein coding gene Chr3:140673277-140708862 (+)
LP/J MGP_LPJ_G0027892
 protein coding gene Chr3:150843861-150881029 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027781
 protein coding gene Chr3:168259156-168296997 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028438
 protein coding gene Chr3:147549985-147587133 (+)
PWK/PhJ MGP_PWKPhJ_G0026842
 protein coding gene Chr3:143110160-143145980 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026670
 protein coding gene Chr3:145713113-145751953 (+)
WSB/EiJ MGP_WSBEiJ_G0027199
 protein coding gene Chr3:148505613-148540557 (+)



Homology
more
  • Human Ortholog
    SYDE2, synapse defective Rho GTPase homolog 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SYDE2, synapse defective Rho GTPase homolog 2
  • Links
    NCBI Gene ID: 84144
    neXtProt AC: NX_Q5VT97
    UniProt: Q5VT97

  • Chr Location
    1p22.3; chr1:85152491-85201724 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    721
  • Tissues
    6
  • cDNA Data
    25
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036863 Ensembl Gene Model | MGI Sequence Detail 33851 C57BL/6J ±  kb
transcript ENSMUST00000039517 Ensembl | MGI Sequence Detail 5495 Not Applicable  
polypeptide ENSMUSP00000041897 Ensembl | MGI Sequence Detail 1314 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR035892 C2 domain superfamily
    IPR000198 Rho GTPase-activating protein domain
    IPR052118 Rho GTPase-activating regulator
    IPR008936 Rho GTPase activation protein
Molecular
Reagents
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  • All nucleic 26
    cDNA 25
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory